Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_020871.1 Length=133057 Score E Sequences producing significant alignments: (Bits) Value seq153 147 2e-30 >seq153 Length=135117 Score = 147 bits (162), Expect = 2e-30 Identities = 621/967 (64%), Gaps = 14/967 (1%) Strand=Plus/Plus Query 89419 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 89478 || || ||| | |||||||| || || | || ||||| ||||| || || ||||| ||| Sbjct 56660 AGCGGCATCCTGAACTGGAATGACATCCCCTACCCGTCCTTCTACCGGGCCTACAAGGAG 56719 Query 89479 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGACATGAAGAGCGATGCCAAGCAG-TA 89537 | | || || | |||| | || || || || ||||||||| |||| || || | || Sbjct 56720 CTGTCGACCAACTTCTGGATCCCCGACGAAGTGGACATGAAGGGCGACGCGC-GCGGCTA 56778 Query 89538 CAACCACTT--ATCCGAA-GAAGAGAAATATGCGTTTGATTCCATTATCGGACTTTTAGC 89594 | | | || || ||| |||| ||| | ||||| || ||||| || | || Sbjct 56779 CGGTGAGCTCAATGCGCGCGAAAAGAA---TGCCTACGATTCGATCATCGGCCTGCTGGC 56835 Query 89595 TACACTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGC 89654 || || ||||| || || || || || || || || | || ||||| ||| || | Sbjct 56836 CACGCTCGACTCGCCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGACCC 56895 Query 89655 CTCTGTTCATGCTATTACAGCTATCATTGCACAACAAGAGGCTATTCATAATGAGAGTTA 89714 | | ||||| | | || ||||| | || || |||| || || || ||||| || Sbjct 56896 GGCCGCGCATGCCAACGCCGCGATCATCGGCCAGCAGGAGGTGATCCACAACGAGAGCTA 56955 Query 89715 TTCTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGC 89774 || ||||| ||||| || | | || ||||| || || || || || Sbjct 56956 CAGCTACGTACTGGCTTCCATCGCCGGGCTGGCCGACCAGAACCGCGTGTTCGAAATCGC 57015 Query 89775 TAGAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTT 89834 | || || || || || | || || || || ||| |||| || ||||| || Sbjct 57016 CCGCACGCATCCCACCATCCTGGCGCGCAACCAGCCGATCATGCAGTCCTACGACGACTT 57075 Query 89835 CATGAATAACAAAACACCTGAAAATATGGTAAAAGCTTTAGTACAGTCATCTATCTTAGA 89894 |||| | || || | || | || | | | | ||||| || ||| | || Sbjct 57076 CATGCGCGAGAAGACCGCCGAGACCCTGATCCGGTCGCTGATCCAGTCGTCGATCCTGGA 57135 Query 89895 GGGTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGAT 89954 || || || ||||| ||| || || | ||||| ||||| || || || ||| || Sbjct 57136 AGGCATCAACTTCTATTCCGGCTTCGCGTTTTTCTACAACCTGGTCCGCCAGAACCGCAT 57195 Query 89955 GACGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTT 90014 ||| || || || || ||||| |||||||| || || || || | ||||| | ||||| Sbjct 57196 GACCGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAACTGGCCCACACCAAGTT 57255 Query 90015 TATTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACT 90074 || || || || | || || | || || |||| | || || || | || Sbjct 57256 CATCAGCGAACTGATCCGCGCCATCATCGGCGAGAACCAGCAGCTTCAGGGCGACCAGCT 57315 Query 90075 AAATGACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGCG-TGGTCTA 90133 | | |||||| | | | | || |||||| | | ||| ||| | ||| ||| | Sbjct 57316 CACCGCTTACGTGCACGATGCATTCGAGCATGCCATCGCGCTGGAA-ACGCGCTGGACCG 57374 Query 90134 GTGAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAGATGTTAGACTATGTAAAAT 90193 | ||||| || | ||||| || || || || ||||| |||||| | ||| || || | Sbjct 57375 GCGAGGTGCTGGACGGCATCGACGGCATCGACGTGGACGAGATGATCCGCTACGTGAAGT 57434 Query 90194 ATCGTGCTAATAAAATGTTAGGGATGCTAGGTCTTCAACCAA-TGTATCAAGGTCACACA 90252 | || || || || ||| || ||||| || | || | | |||| || | ||| | Sbjct 57435 ACCGCGCCAACAAGATGGCCGGCATGCTCGG-CATCGAGAAGCTGTA-CAGCGACACCAA 57492 Query 90253 -GAAAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGA 90311 | || ||| | ||||| || || || ||||| || || || || || || ||||| Sbjct 57493 CGTCAACGTGATGCCGTGGATCAAGGCCTATGCCGACAATTTCACCGAGACCAAGACCGA 57552 Query 90312 CTTTTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGA 90371 ||| ||||| ||||| ||| | ||||||||||| || || | ||||| || ||||| || Sbjct 57553 CTTCTTCGAGATGCGCAACGCCAGTTACAAGAAGACCAATTCGGACAACGGCTTCGACGA 57612 Query 90372 CTTATGA 90378 | | ||| Sbjct 57613 CCTGTGA 57619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425604026601446