Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq2221 881 0.0 seq3825 297 1e-75 seq3473 190 1e-43 seq90 98.7 5e-16 >seq2221 Length=11212 Score = 881 bits (976), Expect = 0.0 Identities = 760/939 (81%), Gaps = 4/939 (0%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 || ||||||||||||||| || ||||||||||| || |||||||||||||| || Sbjct 4108 GCGATCAACTGGAACCGCATCCAGGACGACAAGGACCTCGAGGTCTGGAACCGTCTGGTG 4167 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||||||||||||||||| |||||| | || | || |||||| | | | | ||| |||| Sbjct 4168 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGAACACG 4227 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 || || || ||||| | ||||| |||||||| |||||||| || ||| |||||||| Sbjct 4228 CTCACCCCCGACGAGCAGCTGCTCACCATGCGGGTGTTCACCGGTCTCACGTTGCTCGAC 4287 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGAG 59505 |||||||||||||||||||| || ||| |||||||| ||||||||||| || ||||| Sbjct 4288 ACGATCCAGGGCACCGTGGGCGCGGTGTCGCTGATCCCCGACGCGATCACCCCTCACGAA 4347 Query 59506 GAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAAC 59565 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4348 GAGGCCGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACTCCTCG 4407 Query 59566 ATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGAG 59625 ||||||||||| || ||| | ||||||||||||| ||||||||||||||| ||| Sbjct 4408 ATCTTCTCGACCCTCGCGTCGACGAAGGAGATCGACGAGGCGTTCCGCTGGTCCACCGAG 4467 Query 59626 AATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCCG 59685 || |||||||| || |||||||||||| || |||||||||||||||| ||||| ||| Sbjct 4468 AACCCGAACCTTCAGAAGAAGGCTCAGATCATCATGGACTACTACCAGGGCGACGACCCG 4527 Query 59686 CTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTAC 59745 || ||||| ||||||||||| || | |||||| |||||| |||||||||||||||||| Sbjct 4528 CTCAAGCGCAAGGTGGCCTCCACCCTTCTGGAGTCGTTCCTCTTCTACTCGGGCTTCTAC 4587 Query 59746 CTGCCGATGTACTGGTCTAGTCG--GGGGAAGCTGACGAACACGGCCGACATGATCCGGC 59803 |||||||| || ||||| ||| || |||||||||||||||||||||| ||||||| | Sbjct 4588 CTGCCGATCTATTGGTC--CTCGAAGGCGAAGCTGACGAACACGGCCGACCTGATCCGCC 4645 Query 59804 TCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCC 59863 ||||||| || |||||||| |||||||| ||||||||||| |||||||||||| |||| Sbjct 4646 TCATCATCCGCGACGAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGGCC 4705 Query 59864 TGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTAC 59923 | |||| ||| | ||| |||||||| ||||| ||||||||||||| | || | Sbjct 4706 TCGAGAACGAGACCCAGGAGCGCCGCGATGAGCTCAAGGACTACACGTTCTCGCTCATGT 4765 Query 59924 TCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGA 59983 |||| | |||||||||||| | ||||||||||||| || |||||||| || || |||| Sbjct 4766 ACGAGCTCTACGACAACGAGGTGCAGTACACGCAGGACCTCTACGACGGTGTCGGTCTGA 4825 Query 59984 CTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCT 60043 | || || || |||| |||||||| |||||||||||||||||| || ||||| || |||| Sbjct 4826 CCGAAGACGTGAAGAAGTTCCTGCACTACAACGCCAACAAGGCCCTCATGAACCTGGGCT 4885 Query 60044 ACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGT 60103 |||||||| ||||||| | || || | ||||| |||||||| || ||||||| | Sbjct 4886 ACGAGGCGATGTTCCCCTCCAGCGTCACGAACGTGAACCCGGCGATCCTGTCGGCACTCT 4945 Query 60104 CCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTG 60163 | || || |||||||||||||||||||||||||| || ||| |||| || || | Sbjct 4946 CGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCAGGCTCGTCGTACGTCATCG 5005 Query 60164 GCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 ||||||| |||| ||||||||||| || |||||||||| Sbjct 5006 GCAAGGCCGAGGCCACGGAAGACGACGACTGGGACTTCT 5044 >seq3825 Length=344 Score = 297 bits (328), Expect = 1e-75 Identities = 272/344 (79%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 59797 ATCCGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAG 59856 ||||| |||||||| || |||||||| |||||||| ||||||||||| ||||||| |||| Sbjct 344 ATCCGCCTCATCATCCGCGACGAGGCTGTGCACGGGTACTACATCGGCTACAAGTACCAG 285 Query 59857 CGCGGCCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGT 59916 ||||| || | | |||||| || || ||||| ||| ||||||||| || Sbjct 284 AAGGGCCTCGAACAGCTCACCGAGGCCGAGCGTGAAGAGCTCAAGAACTACACGTTCGAG 225 Query 59917 CTGCTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTG 59976 |||| ||||| | ||||| |||||| | || ||||| ||||| || ||||||||||| Sbjct 224 TTGCTCTTCGAGCTCTACGAGAACGAGGTCGACTACACCCAGGACCTCTACGACGGCGTC 165 Query 59977 GGACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAAT 60036 || ||||| ||||||||||||| |||||||||||||||||||||||||||||| | ||| Sbjct 164 GGTCTGACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGCCAACAAGGCGCTCAACAAT 105 Query 60037 CTCGGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCG 60096 ||||||||||| | || |||||| ||||| || || || ||| |||| ||| || || Sbjct 104 CTCGGCTACGAAGGCCTCTTCCCGAAGGACGAGACGGACGTCAATCCGGCTATCCTGTCG 45 Query 60097 GCACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGG 60140 ||||| || || | ||||||||| |||||||||||||| || Sbjct 44 GCACTTTCACCGAATGCGGACGAGAATCACGACTTCTTCTCCGG 1 >seq3473 Length=4258 Score = 190 bits (210), Expect = 1e-43 Identities = 715/1103 (65%), Gaps = 89/1103 (8%) Strand=Plus/Plus Query 61693 ATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCT 61752 |||||||||||| ||||||||||||| ||||||||||| || ||| |||||||| | Sbjct 1580 ATGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCG 1639 Query 61753 GCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGAC 61812 |||||||| | |||||||| || ||||| |||| || ||||| || || || ||| Sbjct 1640 ACGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGAC 1699 Query 61813 ATCGGCTGCGGCATGATTGCCGTCAAGACGCGGTTCCAGTGGGACGCACTGCACACCGCG 61872 ||||||||||| ||||| ||||| |||| |||| | || || || || Sbjct 1700 ATCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCACGAGGAGCG--------ACGTCG 1751 Query 61873 AAGGCTGGCGCTCCGGATCTGGCTGCGCTGCGCCGTCAGATTGAGGCGGCGATTCCGCTG 61932 | || | || || || | || || ||||| ||| || || || ||| Sbjct 1752 ACGGTCGTCG-------GCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTG 1804 Query 61933 TCTCCCGGCAACTACAACACGACGCTGTCGAAGTTCAACTTCACACGCAAGAAGCACGAA 61992 || ||||| |||||| || | |||| | | || | | | | | ||| Sbjct 1805 TCGGCCGGCCGGTACAAC-CG-CAAGGTCGTGG--CCACCGCGGAACCGCGCATCAC--C 1858 Query 61993 GAGCTGATCCAG-TTGCAGCAGGAGCTGGACGTGGACCTGTCTCACT-CGCC--GAAGTG 62048 |||||| ||| | || | || || | | | |||| | | || | |||| ||| || Sbjct 1859 GAGCTGGAGCAGCTCGCCG-AGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTG 1917 Query 62049 GATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGC 62108 | |||| |||| | ||||| |||||||||||||||||| ||| ||||| | Sbjct 1918 GCGTCTGCAGTTGGGCACGCTCGGTTCAGGCAACCACTTCATCGAGGTGTCGGTCGATGA 1977 Query 62109 CGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGC 62168 || || ||||||||||||||||| || || || || ||||||||||||||||| Sbjct 1978 GCTCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCGC 2037 Query 62169 GCAGCGCCACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGT-GCGCGGCTGGCTGGCT 62227 || ||||||| || || || ||| || | ||| ||| | ||| Sbjct 2038 CGGGCACCACATC------GCCGT-------CGCCCAGCGGCTGGCGAGGCAG--TGG-- 2080 Query 62228 CCGATTCGGTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACGAGG 62287 || ||| || || || ||| || || || | ||||| ||||| Sbjct 2081 ------TGGATCG--------AC---CTTCCCGACCCCGACCTGGCATACCTGGTCGAGG 2123 Query 62288 GAACGTGGATGTTCGACACG-TACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGTAC 62346 | || | |||| || || |||||| ||||||| ||||||||||| |||||| Sbjct 2124 GCACACCGGAGTTC-ACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTG 2182 Query 62347 CTGAACCGTGCGGAGATGATGGACCGCTTCGTCCAGGTGTTCGCGTGGTGGATGGGCGTC 62406 |||||||| | |||||||||||| ||| || ||| | | ||| ||| | | || Sbjct 2183 CTGAACCGGGAGGAGATGATGGATCGCGTCATCCGG-----CAGGTGTCGGA-GTTCCTC 2236 Query 62407 GAGGCTCAGCGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCCACC 62466 | | | | | ||| |||||||||||||||||||||||||| ||| | | Sbjct 2237 GGAACCCCGGTCGACGAACAGGAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAG 2296 Query 62467 GTGATCGACGGGGAGCGAGTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGGGC 62526 | | ||||| ||| |||||| || | || ||||| || ||| | ||| || || Sbjct 2297 AAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGT 2356 Query 62527 AAGCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGGGGAAGGGC 62586 | |||| | ||||| || |||||||| ||| || |||||||| |||||||| Sbjct 2357 CGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT-----GGAAGGGC 2411 Query 62587 T--GCAGCGC---TTCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTCTCCCGCA 62641 | || | | || || | || | || || || ||||| || || ||||||| Sbjct 2412 TCGGCGACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCT 2471 Query 62642 CGAAGGC-CAAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAGATGCAGGGCATCGAG 62700 || ||| | | || ||||| || | ||| ||| |||| |||||||||| Sbjct 2472 CGGCGGCGCGGCGGAC-CTTCACGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAG 2530 Query 62701 TGGCGCGAGGACATCGCCGAGAAGCTGGTCGATGAGATCCCGTCCTGC-TACAAGGACAT 62759 | || || | |||| | |||| ||||||||| | || |||||| || Sbjct 2531 TTCCGTGA------CACCGATGCCTTCATCGACGAGATCCCG-CAGGCGTACAAGCCGAT 2583 Query 62760 CGACCAGGTCATGGCCGATGCCG 62782 ||||||||| ||||| ||||||| Sbjct 2584 CGACCAGGTGATGGCGGATGCCG 2606 >seq90 Length=95466 Score = 98.7 bits (108), Expect = 5e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 61684 ATCGCGGAGATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGC 61743 ||||| | | |||||||| || |||| ||||| |||||||||| | ||| ||| Sbjct 70168 ATCGCCGCGGTGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGC 70109 Query 61744 AAGGGATCTGCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTT 61803 || || | | || ||| | || ||||| ||| ||||| ||||||||||||| || Sbjct 70108 AAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTC 70049 Query 61804 GGGGTGGACATCGGCTGCGGCATG 61827 || ||||||||||||||||||||| Sbjct 70048 GGCGTGGACATCGGCTGCGGCATG 70025 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 61694 TGCCGTTCATCTACCC--GCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATC 61751 |||| |||||| ||| | | || || ||||||| || | ||| ||||||||| | Sbjct 11468 TGCCCTTCATCCACCGCTGGATCT--CGGTGATGCCCGACGTGCACCTGGGCAAGGGCGC 11525 Query 61752 TGCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGA 61811 | ||||| | || | ||||||| ||||| |||| ||||| || || || ||||| Sbjct 11526 CACCATCGGCTCGGTGGTGCCCACCATCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGA 11585 Query 61812 CATCGGCTGCGGCATGATTGCC 61833 |||||||||||||||||| ||| Sbjct 11586 CATCGGCTGCGGCATGATCGCC 11607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258898610838252