Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1060 172 2e-37 seq19 145 2e-29 seq44 95.1 4e-14 >seq1060 Length=53974 Score = 172 bits (190), Expect = 2e-37 Identities = 224/308 (73%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| |||||| ||||| | |||||| || || || ||||| ||||| || || || Sbjct 7702 GTCCTCCATAGCCTTGACGAGACGACGTTGGATGTATCCAGTCTCTGATGTCTTGACGGC 7761 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 ||||| || ||||| |||||||||||||||| |||||||| | ||| | || || Sbjct 7762 GGTATCGATGAGACCTTCACGACCACCCATAGCGTGGAAGAAGAACTCCTGTGGGGTGAG 7821 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | ||||| |||| ||||| || | || |||||| || |||| |||||| Sbjct 7822 ACCTCGCAGGTAGGAGTTCTCGACGAAGCCTCTCGACTCGGGACCATAGTCGTCCTTGGT 7881 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| ||||| || | ||||| |||| | |||| ||||||||| || |||||||| Sbjct 7882 GAAGTGGGGCAGAGTGCGGTTCTGGAAGCCAAAGGGGACACGCTTTCCTTCGACGTTCTG 7941 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCA 302868 ||||| | ||||| |||||||| || || || | || | ||||||||||| || Sbjct 7942 TTGTCCGACGCACGCCATCATCTGTGAGATGTTGATGAAGGA--ACCCTTGGAGCCGGCG 7999 Query 302869 TTTACCAT 302876 || ||||| Sbjct 8000 TTGACCAT 8007 >seq19 Length=879724 Score = 145 bits (160), Expect = 2e-29 Identities = 664/1036 (64%), Gaps = 28/1036 (3%) Strand=Plus/Minus Query 155319 GCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTA 155378 || || |||||||| || ||||| || | |||||| | |||| ||| | ||| | | Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 585860 Query 155379 AATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGG 155438 |||| | | |||| || ||| | || || || ||||| || || | ||| ||||| Sbjct 585859 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 585800 Query 155439 CGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAAT 155497 | || | ||| | | | |||| | | || ||| |||| ||||||||| Sbjct 585799 CTGTGGCGCATGTTGGAATTTTTAG-CTTCCTCTACCGGATAATAATTATGATCAATAAT 585741 Query 155498 GTTATTTAAATTT---GTAACCA-ATACCTTGGTTACGTCTGCTAATTTCACATAGTCAA 155553 ||||| | || ||| || ||| |||||| || ||||||| || |||| Sbjct 585740 TTTATTCAGGTTCAGGGTAGCCTGATA----GGTTACATCATATAATTTCTGATGATCAA 585685 Query 155554 ATGTTTTATCC-TCATTTACAAA-CATACCAAGACCAATAGACGCCAGATTACATACCGC 155611 | | ||| | | ||||| | | ||| |||| || ||||| |||||||| || Sbjct 585684 AC----TCTCCGTTGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGC 585630 Query 155612 AGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGT 155671 | ||| | | | | || |||| ||| || || ||||| ||||| |||||||| Sbjct 585629 AACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 585570 Query 155672 GCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGT 155731 |||||||| | |||||| ||||| ||||| ||||| || || | | || ||||| Sbjct 585569 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 585510 Query 155732 TCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTT 155791 ||| || || ||||||| |||||||| | ||| || || | || ||||| || Sbjct 585509 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTT 585450 Query 155792 GTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCCT-CACCGTA 155848 | | ||||| || || ||||||| ||| | || ||| || |||| | Sbjct 585449 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCAT-CG--AATTCTGCACCAAA 585393 Query 155849 ACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGAT 155908 ||||| |||||| ||| | || || || || | ||| | || | Sbjct 585392 GCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTC 585333 Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 ||| | ||| || | |||| |||||| |||||||| | || || || Sbjct 585332 TACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAG 585273 Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTA-AGAATTCCTCAATATCAGGATGGTGTG 156027 || || | || || || || || || || | | || || || ||| | ||| || Sbjct 585272 TTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCAC-ATCTGCATGCCATG 585214 Query 156028 GCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAG 156084 ||||||| || || |||||| ||| || | || || |||||| || ||||| || | Sbjct 585213 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 585154 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || | || || || | |||||| | ||| |||||| || || || ||||| | Sbjct 585153 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 585094 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||||| || || | | || | ||||| || || ||||||||||||| | || Sbjct 585093 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 585034 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 ||||||| |||| || |||| ||||| | |||| ||||||||| || || | || Sbjct 585033 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 584974 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | |||| | |||| ||| | ||||||| || || | || || |||| || | Sbjct 584973 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 584914 Query 156325 GTGTTGCATGAATAAA 156340 | |||||||| |||| Sbjct 584913 GGGTTGCATGCGTAAA 584898 Score = 107 bits (118), Expect = 6e-18 Identities = 251/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||| |||||| || | || ||||||||||| ||||| || ||||| |||||| Sbjct 583400 CATTTCATTTCTCATATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAAC 583459 Query 133271 TTAG----GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGG 133326 | | |||| || ||| | ||||| || || ||||||||||| |||||||| Sbjct 583460 CTTGCAGTGAAC----TTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGG 583515 Query 133327 GCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTA 133386 | ||||| ||||||||| ||||| ||| || ||| | || || ||||| || Sbjct 583516 CTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTA 583575 Query 133387 CATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTCCTTGTA 133445 || |||||| | | | || ||| || ||| | ||| ||| || |||||||| Sbjct 583576 TATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCC-GTAGAGACGGTTCCTTGTG 583634 Query 133446 TTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTA 133505 | || || ||| | || ||||| | ||||| ||| | | | |||||| Sbjct 583635 TAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGG------GCGGAAATTTTGCCG 583688 Query 133506 CTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTA 133565 ||| | || ||||| || | ||| || |||||||| ||||| || ||||| || | Sbjct 583689 AACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTTCGA 583748 Query 133566 TTTTTTGGCTTAAAAA 133581 | || ||| | ||||| Sbjct 583749 TCTTCTGGTTGAAAAA 583764 >seq44 Length=77107 Score = 95.1 bits (104), Expect = 4e-14 Identities = 320/493 (65%), Gaps = 14/493 (3%) Strand=Plus/Minus Query 155666 GATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTA 155725 |||||| || | |||| |||||| || || ||||| ||||| |||||||| || ||||| Sbjct 9977 GATGGTTCCGAGGTTCTGCTGGTTGGACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTA 9918 Query 155726 TGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAAT 155785 ||||| || ||||| ||||||| || | || | |||||| || | || || | Sbjct 9917 GGGGGTACCGGTCTCGATCTGTGACTCGATGATAGCGAACCAGAGATCCTGAGCCTTTAC 9858 Query 155786 T-TGCTTGTTGTATCTGCC---TTCCGACTCATATTTCATATACAGCGTTCGGTAATCCT 155841 ||| | | ||| | || |||||| || | || ||| ||| | || | Sbjct 9857 GGTGCGACGAG-AGAGGCCAGGTGTCGCCTCATACTTGGTGTAGAGCTCGCGGAACTCAT 9799 Query 155842 CACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA---AATTT 155898 | || | || || || ||||| || || ||| || || || ||| | | Sbjct 9798 CTCCCCAGCACTCGGCGAGGCCAGGTGCCTCATTGGGACAGAAGAGACTCCAGTCAGAGT 9739 Query 155899 TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCC 155958 | | ||| |||||||||| || | |||| |||| | || ||||| ||||| | Sbjct 9738 TGGTCTCGA---CACGCTCCATGAACAGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGC 9682 Query 155959 TTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAG 156018 || |||||| | |||||| ||||| || || || | ||| || | || | Sbjct 9681 GGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGAAGATCAAGGAACTCAAAGACGTCGG 9622 Query 156019 GATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTA 156075 || |||||| || || | ||||| ||| || | ||| ||||||||| || | Sbjct 9621 CGTGCCATGGCTCGAGGTAGACGGCAAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGA 9562 Query 156076 CATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCAT 156135 | || || ||||| | ||||||||| | ||||| || | | || || || ||||| | Sbjct 9561 CGTAGCGGGCAGTGTCATTGAAGACGCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGT 9502 Query 156136 TGGTTCCGCGAAT 156148 |||| ||||| || Sbjct 9501 TGGTACCGCGGAT 9489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471622856914199