Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq3870 140 4e-28 seq5011 86.0 7e-12 >seq3870 Length=345 Score = 140 bits (154), Expect = 4e-28 Identities = 214/299 (72%), Gaps = 16/299 (5%) Strand=Plus/Plus Query 152739 GATGCGTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACC 152798 ||||| |||||||| ||||| |||||||||||||| || || |||||||| || || Sbjct 12 GATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGACG 71 Query 152799 CCGTTTGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAA---CGCATGATCCAG 152855 |||||||| ||| | ||| ||| || || ||| | ||| ||| |||| ||| Sbjct 72 CCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGC---TGGGAATCGCGCCTGATTCAG 128 Query 152856 AAAGCGATCCTGAAAAACCGTATTCGC-GGCCTTGGTAAAGAGGGTATTACTCCGGTATT 152914 || |||||||| ||||||| |||| ||||| |||||| | ||| ||| |||| || Sbjct 129 GAATCGATCCTGCGTAACCGTA-TCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGTT 187 Query 152915 CCCGAAACTGGT-TATG---TTCATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAA 152970 |||||||||||| | || ||| | | || | |||| | | || |||| | Sbjct 188 CCCGAAACTGGTGTTTGCGATTCGCG----ATGGTCTGAACCATAAAAAAGGCGATCCGA 243 Query 152971 ACTATGACATCAAACAACTTGCCCTGGAATGTGCTTCGAAACGCATGTACCCAGATATC 153029 |||| ||||||||||| || || ||||| || || || |||||||| || |||||| Sbjct 244 ACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 302 >seq5011 Length=2423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 40560 TCGCGGGATC--ATCGTTTCCGCATGGAATCCGGTTGATCTT-GATGCAATGGCTTTGCG 40616 |||||| || |||||||||||||||||||||| | || | |||| |||||| ||| Sbjct 638 TCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGC-GCTCGTCGATGAAATGGCGCTGCC 580 Query 40617 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 40676 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 579 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 520 Query 40677 TCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATAGCCTCATACGCTCTCCT 40736 ||||| || | ||| |||| | || ||||||||||||| || || || || || || Sbjct 519 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 460 Query 40737 GAC 40739 ||| Sbjct 459 GAC 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563725620674040