Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq340 145 7e-30 seq3559 143 2e-29 >seq340 Length=55687 Score = 145 bits (160), Expect = 7e-30 Identities = 219/308 (71%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 105017 CACCATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTG 105076 |||||||| || | | |||| |||| |||||| |||| ||||||| || | |||| Sbjct 6232 CACCATCATCAAGATGGGCTTCCCCGGCTACTTCCTGATCGTGGCCGACTTCATCCAGTG 6291 Query 105077 GGCTAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGT 105133 || ||| ||| |||| | |||| |||||||||||||| | | |||||||| || Sbjct 6292 GGGGAAGAACCAGGGCATCCCGATCGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGT 6351 Query 105134 CTCGTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCG 105193 | | | || | |||||||| |||||||||||| |||| ||||| |||||||||| Sbjct 6352 GGCCTGGGCGCTGCAGATCACCGATCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCG 6411 Query 105194 GTTCATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGC 105252 |||| || || || || | | |||||| |||| ||||||| | ||| | | | Sbjct 6412 GTTCCTCAACCCCGAACGCGTGTCGATGCCCGACTTCGACATCGACTT-CTGCATGGACC 6470 Query 105253 GTCGCGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGA 105312 | |||| ||| ||| |||||||| |||| | ||||||| ||| ||||| || || Sbjct 6471 GCCGCGACGAAGTCATCGACTACGTCGCGCGCAAGTACGGCCGCGAACGCGTCAGCCAGA 6530 Query 105313 TCGGCACC 105320 || |||| Sbjct 6531 TCATCACC 6538 >seq3559 Length=12351 Score = 143 bits (158), Expect = 2e-29 Identities = 207/289 (72%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCAT 105091 |||| | || |||||| |||||||||||||| || ||| ||||| |||| || |||| Sbjct 3449 CTTCCCGGGATACTTCCTCGTCGTCGCCGACTTCATCAACTGGGCCAAGGACAACGGCAT 3508 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | ||| || || |||||||| |||| | || ||| | ||| ||||| |||| | || Sbjct 3509 CCGCGTGGGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGAT 3568 Query 105152 CACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCG 105211 |||||| |||||||| || | ||| |||||| |||||||| ||| || || || || Sbjct 3569 CACCGACCTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCG 3628 Query 105212 GAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGA 105271 | | |||||| |||| |||||||| | ||| |||||||||||| |||| Sbjct 3629 TGTCTCCATGCCCGACTTCGACGTCGACTTCGATGACCGGCGCCGCGGCGAGGTCATCGA 3688 Query 105272 CTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTC-GATCGGCAC 105319 |||| || | || ||||| ||| ||||| || | ||||| ||| Sbjct 3689 CTACGTCACGGAGAAGTACGGATCCGAGCGCGTC-GCGCAGATCGTCAC 3736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456014726599160