Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq250 159 5e-34 seq5011 145 1e-29 seq329 104 3e-17 seq1432 87.8 3e-12 >seq250 Length=59172 Score = 159 bits (176), Expect = 5e-34 Identities = 181/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || ||||||| | |||||| |||||||| |||||| || Sbjct 46903 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGC 46844 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || ||||||||||| || |||||| | ||| ||||||| || || |||||||| || Sbjct 46843 GACGGCTTCCCGCTGGTCACCACCAAGAAGCTGC-ACCTGCGGTCGATCATCCATGAGCT 46785 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 ||||||||||||||| ||||||||||| ||| ||||| | || || || ||| Sbjct 46784 GCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCAT 46725 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| ||||| || || |||||||| |||||| | ||||| ||||| ||||| Sbjct 46724 CTGGGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCG 46665 >seq5011 Length=2423 Score = 145 bits (160), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||||||||| |||||||| | ||| | |||||| |||||||||| ||| | || Sbjct 953 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 894 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTG 99071 | ||||| || | ||||||||| || || || || ||||| || ||| Sbjct 893 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 834 Query 99072 CTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATT 99131 |||||||||||||||||||| || || ||| || || || || || || || || || Sbjct 833 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 774 Query 99132 TGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGG 99191 ||||| |||||||| ||| | || ||||| ||||| ||||| || || | |||||||| Sbjct 773 TGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCGC 714 Query 99192 GCATGGACTGCGC 99204 | ||| |||||| Sbjct 713 TCCTGGCCTGCGC 701 >seq329 Length=161735 Score = 104 bits (114), Expect = 3e-17 Identities = 174/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 ||| | ||| | || || |||||||| | ||| || ||||| |||||| | |||||| Sbjct 13141 AAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAAC 13200 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCAT 99065 | || ||||| || || ||||| || ||||| || | || |||||||| Sbjct 13201 CTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCAC 13260 Query 99066 GAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTA 99125 |||||| | ||||| | | || ||||||||||| |||||||||| || |||| Sbjct 13261 GAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTA 13320 Query 99126 ACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAG 99185 | || ||||| || ||||| || |||| || ||||| || || || || || || Sbjct 13321 AAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAA 13380 Query 99186 TGGCGGGCATGG 99197 ||||| ||||| Sbjct 13381 TGGCGTTCATGG 13392 >seq1432 Length=12607 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| | || |||||||| |||||||| || |||||| ||||| | ||||||||||| ||| Sbjct 8825 AAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAAC 8884 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 ||||| || || || | |||| ||| | || ||||||| | | | | || Sbjct 8885 ATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGA 8944 Query 99705 GATTTCGTCTGGACCGGCGGTGA 99727 || ||||||||||| ||||| || Sbjct 8945 GACTTCGTCTGGACGGGCGGAGA 8967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716544291147080