Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021533.1 Length=45942 Score E Sequences producing significant alignments: (Bits) Value seq2859 82.4 2e-11 seq192 80.6 8e-11 >seq2859 Length=8594 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 3875 GGTCTTTTAGGCGCGTAGCTCAATTGGTAGAGCGGCGGTCTCCAAAGCCGCTGGCTGCAG 3934 ||||| | |||| ||||||||||||| ||||| |||||||||||| |||| || ||||| Sbjct 3485 GGTCTCTAGGGCG-GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAG 3543 Query 3935 GTTCGAGTCCTG-CCGC 3950 |||||| ||||| |||| Sbjct 3544 GTTCGATTCCTGTCCGC 3560 >seq192 Length=23826 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 3876 GTCTTTTAGGCGCGTAGCTCAATTGGTAGAGCGGCGGTCTCCAAAGCCGCTGGCTGCAGG 3935 || ||||||| || |||||||||||| |||||| ||||||||||| ||| || || ||| Sbjct 23469 GTGTTTTAGGGGCATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGTTGTAGG 23410 Query 3936 TTCGAGTCCTGCCGCGTCTGCTAC 3959 ||||| |||| | || |||| || Sbjct 23409 TTCGATTCCTACTGCCCCTGCCAC 23386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146874786076896