Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq841 109 2e-19 seq447 107 6e-19 seq648 86.0 2e-12 >seq841 Length=45872 Score = 109 bits (120), Expect = 2e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCG 33222 || |||||| ||| || || ||||| || || | | || || ||| |||| ||| Sbjct 39903 ATCATGGCAGTTCGTGGCATTAACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCG 39844 Query 33223 GAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAG 33282 ||||| || || || || ||||| ||| || ||| | || || || || Sbjct 39843 GAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAA 39784 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 ||| || ||| |||||||| | | |||||||||||||||||||||||||| Sbjct 39783 ACCTGGCGTGACAAACAGACAGGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTG 39724 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 | ||||| ||||| || || |||||||||||||| |||||||| ||| | ||||| || Sbjct 39723 CTGTTCGGCAAGCTCGCGGAAGTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTAC 39664 Query 33403 GTAGAAGG 33410 | ||||| Sbjct 39663 ATCGAAGG 39656 >seq447 Length=48793 Score = 107 bits (118), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 4895 CCAGATTTTATTTACCGCATTCTCTCTGGCAATCTTGCGACCAATTTCAGCGTCGAAATT 4954 |||||| || | | | || |||| | |||||||||||| || | ||| |||||||| || Sbjct 17550 CCAGATCTTCTGTTCGGCGTTCTGGCGGGCAATCTTGCGGCCCACTTCGGCGTCGAAGTT 17491 Query 4955 CTCTGGACTGGCGCAGGCGCTTTCTCCTGTCACGGTGAAGCCGTTTTTCAGCACCAAGAC 5014 ||| ||||||||||| ||||| || || || |||||||| ||||| ||| |||| ||| Sbjct 17490 CTCCGGACTGGCGCATGCGCTCTCACCGGTGACGGTGAAACCGTTGCGCAGGACCAGGAC 17431 Query 5015 GCAAAAGGT 5023 || ||||| Sbjct 17430 ACAGAAGGT 17422 >seq648 Length=65085 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 33249 CGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCAACAGGGGA 33308 ||| ||| ||| ||| |||||| || || ||||||| ||| || ||| || | Sbjct 40113 CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCA 40172 Query 33309 AAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGC 33368 ||| ||| | || |||||||| || ||| || ||||| ||| | |||||| | || Sbjct 40173 GAAGGTCGAGAAAACCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTTGCAGAGATCGC 40232 Query 33369 TGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAA 33413 || ||||||||||||||||| || ||||| || | ||||| || Sbjct 40233 CGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAA 40277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152026154271036