Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq962 136 1e-27 seq191 125 2e-24 seq716 122 2e-23 seq9215 105 2e-18 seq1730 100 8e-17 seq2747 89.7 1e-13 >seq962 Length=20954 Score = 136 bits (150), Expect = 1e-27 Identities = 337/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 870 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 811 Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394 ||||| || ||||| | ||| || | ||| ||| ||||| | || | | | | Sbjct 810 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCA-GAGAAGTTGTTGATATTT 752 Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCA 39452 | | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| |||| Sbjct 751 CAGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCA 694 Query 39453 CGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-G 39510 || || | ||||| ||| || | | | || || || |||| | | Sbjct 693 CGCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTG 636 Query 39511 ACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCC 39570 ||| | |||||| | | | || || || || | || || || || || || Sbjct 635 ACAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACC 576 Query 39571 AGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCA 39630 |||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| || Sbjct 575 AGCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCA 516 Query 39631 CGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTA 39689 | |||||||| | |||| | || | || ||| |||||| |||| | || ||| Sbjct 515 CAGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTG 457 Query 39690 TACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAG 39747 ||| | || | ||| ||||||| ||| ||| ||| | |||||| || | || | Sbjct 456 TACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGG 399 Query 39748 CAAGCCAGCGTCCCATCTGG 39767 || | | || | |||| || Sbjct 398 CACGGTAACGGCTCATCGGG 379 >seq191 Length=2067 Score = 125 bits (138), Expect = 2e-24 Identities = 161/217 (74%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 37253 CGTACGCAAAAATTATTG--TATCGTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAAC 37310 |||||| ||||| |||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 305 CGTACGTAAAAA--ATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAAC 248 Query 37311 CCGCCGTCGAGCGGGTTTTGTC-GTTTCTGGGGCTGGGGATTCGTTGGTCCTGGTCTATT 37369 |||||||||||| |||||| | ||| || | || | ||| | || | || || Sbjct 247 CCGCCGTCGAGCTGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGAT--AACTCAATA 190 Query 37370 CCGCAGTTATCCATTGGTTCGGCTTCTTTGACGTTTCCGCTTCTAATTTGCTGTACATGA 37429 || |||||| || || || | ||| | ||||||| |||| ||||| ||| | Sbjct 189 CCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCTGCTT---TTTTGCGATACGTTG 133 Query 37430 TGTTCCCTCAATTTGCACCTGCTGTATCAGCGAGGTG 37466 | |||||||||||| |||| ||| | || |||||||| Sbjct 132 TATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTG 96 >seq716 Length=76659 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 8822 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8881 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 24529 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 24588 Query 8882 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATTCTTACGGG 8941 ||| |||| ||||||||||||| | ||||||| ||| ||| || | | ||| Sbjct 24589 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 24648 Query 8942 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8999 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 24649 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 24706 Query 9000 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 9059 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 24707 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 24766 Query 9060 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 9119 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 24767 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 24826 Query 9120 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 9179 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 24827 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 24886 Query 9180 ACCTGGTTGTGGAGCGTGA-TGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCT 9238 ||||| | || ||||| || ||||| || |||| ||| | ||| |||||||||||| Sbjct 24887 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 24945 Query 9239 GACTATGTTAACCAGTTGCGTGTTTTTGC 9267 || || || ||| | |||| || || || Sbjct 24946 GATTACGTCAACGGGCTGCGGGTGTTCGC 24974 >seq9215 Length=491 Score = 105 bits (116), Expect = 2e-18 Identities = 197/283 (70%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 11974 ATATGACGTGGAAAGACAGACTTCAGGACGCGTCATTTCGCGGTGTGCCGTTTAAGGTTG 12033 ||||| | |||||||||| ||| ||| | || || ||||| || || || |||| ||| | Sbjct 45 ATATGGCCTGGAAAGACAAACTACAGCAAGCATCGTTTCGTGGCGTCCCCTTTATGGTGG 104 Query 12034 AAGAAGA--AAGTGCGGGAACCGGTCGTCGTGTGGAAACGCACGAATACCCGAACCGCGA 12091 | | || ||| || | | |||||||||||| ||| ||| |||||||| || ||||| Sbjct 105 AGGCCGACGAAG-GCTCGTTC-GGTCGTCGTGTGCAAAAGCATGAATACCCAAAACGCGA 162 Query 12092 CAAACCCTATACCGAAGATCTGGGAAAAGTCACTTTCCGCCCGTCCATCA-CGGCTTATG 12150 ||| || | | |||||| |||| || | || | | ||| ||| ||| || | Sbjct 163 CAAGCCGTTTGTCGAAGACATGGGCAAGGCGACACGCGATCTGTCACTCACCGGATTCT- 221 Query 12151 TGGTGGGAGATGACTGCTTTGACCAGCGCGATCGCCTGATTGACGCGCTGAATAAACCCG 12210 || | || ||||||| || || |||||||| |||||| ||||||| | | | | Sbjct 222 TGATCGGTGATGACTATTTGGAGCAGCGCGACAAGATGATTGTCGCGCTGGAGACTGCTG 281 Query 12211 GTCCCGGCACGCTTGTCCATCCGACATACGGTGAGCTGAAAGT 12253 | || || || ||||| ||||| ||||| ||| | || || Sbjct 282 GACCGGGGACACTTGTTCATCCTTGGTACGGCGAGATCAAGGT 324 >seq1730 Length=17063 Score = 100 bits (110), Expect = 8e-17 Identities = 244/364 (67%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 39262 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 39321 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 12811 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 12870 Query 39322 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 39381 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 12871 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 12930 Query 39382 CTGCCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGC 39441 ||| ||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 12931 CTG-CCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGC 12988 Query 39442 CG-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCC 39500 | ||||| || || || | ||||| || || || || || ||| | ||| Sbjct 12989 TGTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCC 13048 Query 39501 GGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39560 ||| || | |||||||| | | | | | |||| || || || ||||| Sbjct 13049 GGCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCC 13108 Query 39561 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 39618 ||||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | | Sbjct 13109 AGGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGT 13166 Query 39619 TTGG 39622 | || Sbjct 13167 TCGG 13170 >seq2747 Length=1393 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24835 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 24886 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132582139043838