Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq44 154 1e-32 seq1971 116 3e-21 seq374 102 7e-17 >seq44 Length=77107 Score = 154 bits (170), Expect = 1e-32 Identities = 303/441 (69%), Gaps = 13/441 (3%) Strand=Plus/Minus Query 139491 AAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG 139550 |||||| ||||| ||||| ||||||||||| || || |||| ||| | || || || || Sbjct 9641 AAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACGGCAAAGGCACCCTTGCG 9582 Query 139551 TTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTC 139607 || |||||| || ||||||| || ||| | |||||| ||||| | ||| || | Sbjct 9581 CTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAAGACGCGAAGCATTGGTAC 9522 Query 139608 CAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGACTGTTGCGAGCTCGGACGTCA 139665 || ||| ||| || |||||||| | |||||| ||| | || || |||| || Sbjct 9521 GAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCG--GCTGGCACGGA--TCT 9466 Query 139666 TGTACATTG--ATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA-T 139722 ||| || | || |||| || ||| || | || || || | |||| | || ||| | Sbjct 9465 TGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGCGCACT-GCTTAAGT 9407 Query 139723 GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGT 139782 |||||||| ||||| |||||||| |||| |||| ||| || ||||| || || | Sbjct 9406 GTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTGGACGAGGAAGCAAGAGGACATC 9347 Query 139783 TGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTC 139842 || ||| || || | || || || || | |||||||| || | | ||| Sbjct 9346 TGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGTAAAGAGACGCTTC 9287 Query 139843 GACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAG 139902 || | | | ||| ||||||| |||| |||| || ||||||||||||| |||| Sbjct 9286 GAGAGCTGGTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTGGATACCGAGAGAG 9227 Query 139903 ACTCGCATCAGCATATGTTGG 139923 || ||||| ||||| |||||| Sbjct 9226 ACACGCATGAGCATCTGTTGG 9206 >seq1971 Length=9940 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | | | Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| ||||| || || ||||| || Sbjct 4203 GACACCATCGAGAACGTCAAGAC-CAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCA 4261 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | || || || || || ||||| ||||| | | | | || ||||| || Sbjct 4262 ACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAA 4321 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || | || ||||| Sbjct 4322 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGTGGAGG 4369 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | | | Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || |||||||| ||||| || || || || ||||| || Sbjct 4431 GACACCATCGAGAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 4489 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || || || ||||| | | | | || || || || Sbjct 4490 GCAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAA 4549 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | || | || | || ||||| Sbjct 4550 CATCCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTCCGTGGAGG 4597 >seq374 Length=102525 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || ||||| || || || || || | | | Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || || ||| |||||||| || || || || |||||||| Sbjct 709 GACACCATTGAGAACGTCAAGACTAA-GATTCAAGACAAGGAGGGCATTCCCCCCGATCA 767 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||||||||| || ||||| ||||| | | | || ||||| || Sbjct 768 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAA 827 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || ||| | || | || | || ||||| Sbjct 828 CATTCAGAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGAGG 875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || ||||| | || || || | | || Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| || ||||| |||||| ||||| || || || || ||||| || Sbjct 481 GATACCATTGAGAACGTCAAGACAAA-GATCCAGGACAAGGAGGGTATTCCCCCCGACCA 539 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | ||||||||||| || ||||| ||||| | | | || ||||| || Sbjct 540 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAA 599 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | || | || | || ||||| Sbjct 600 CATCCAGAAGGAGTCCACTCTCCACCTCGTCCTTCGCCTCCGTGGAGG 647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449839523843560