Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq8755 176 3e-39 seq355 123 2e-23 seq5676 122 6e-23 seq8759 114 9e-21 seq64 111 1e-19 seq59 89.7 4e-13 seq4407 86.0 4e-12 >seq8755 Length=560 Score = 176 bits (194), Expect = 3e-39 Identities = 212/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 94989 GTTGACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCAC 95047 || ||| ||||| || || |||||| | ||| |||||||| || ||| | ||| Sbjct 299 GTCGACAACCGCCGAGATTTCCTCGTCGGTGATGAACGCGCCCTGCATACGGGTCGGCTT 240 Query 95048 CCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGC 95107 || ||| |||| ||||||||| | ||||||||||| || ||||||| |||||| ||| Sbjct 239 ACC-CGCGCCCATGGGCAGGAACAGGCCGTCACCCATACCGATGAGCTTCTCGGCGCCGG 181 Query 95108 CCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACG 95167 || || ||||| || || || || ||||| | || ||||||| || | || | Sbjct 180 GCTGATCGAGGATGACTCGCGAGTCCGTCAGTGAAGACGTCGCGAACGCCAGACGCGAAG 121 Query 95168 GCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGA 95227 ||||||||| ||||| ||||| ||||| || || ||||| || |||||||| ||||| | Sbjct 120 GCACGTTGGTCTTGATCAGGCCGGTGACGACGTCGACGGACGGGCGCTGCGTTGCCAGCA 61 Query 95228 CGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT 95273 | || || |||||||| || || || ||||| | ||||||||| || Sbjct 60 CCAGGTGGATACCGGCAGCACGGGCTTTCTGCGTGATGCGGACGAT 15 >seq355 Length=98473 Score = 123 bits (136), Expect = 2e-23 Identities = 235/338 (70%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 95012 CGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAAT 95070 ||||||| ||||| ||||| || | ||||| |||| | | ||| ||| || | | Sbjct 86502 CGTCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTGGTGCCCGGCGG-CATGTAG 86444 Query 95071 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 95130 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 86443 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86384 Query 95131 TCGGT---GAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGG 95187 ||| | | || | ||| |||| | | | ||| | ||||| ||||| ||| Sbjct 86383 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86327 Query 95188 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 95247 || |||| || ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86326 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86267 Query 95248 CGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCA 95305 ||||||||||||||||| ||| | || ||| | |||| | |||||| | || || Sbjct 86266 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGA---CCTTCTTGCCGACGATCA 86212 Query 95306 TCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 95343 |||| | ||| || | |||||||||||| ||||||||| Sbjct 86211 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86174 >seq5676 Length=789 Score = 122 bits (134), Expect = 6e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 95476 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 95535 ||||| |||||||| | ||| || ||||| || |||||||| |||||||| | ||| | | Sbjct 70 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGACCATCTTGGGGTCGATGAGGATCATC 129 Query 95536 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 95595 || || || | |||||| ||||| || || ||||||||||| | |||||| Sbjct 130 CGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCTC 189 Query 95596 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 95652 ||||| || || ||||||| || |||||||| || || ||||| || || |||||| Sbjct 190 GACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGGCATCTTCGCGAGGTTC 246 >seq8759 Length=471 Score = 114 bits (126), Expect = 9e-21 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 95148 GGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGA 95207 |||||| | || | |||||| ||||| | ||||| || || ||||| || || ||| Sbjct 14 GGCGAAGGCCAGTCGAGACGGGACGTTCGCCTTGATGAGTCCGGTGACGACGTCGACGCT 73 Query 95208 GGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 95267 |||||||| ||||| |||||||| || || |||| || ||||| ||| | |||||| Sbjct 74 CGGCCGCTGGGTCGCGAGGACGAGGTGGATGCCGGAGGCTCGCGCGAGCTGCGTGATGCG 133 Query 95268 GACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTC 95327 || || | |||| || || | | || | ||||||||||||| ||||| ||||| Sbjct 134 CACGATCGAGTCCTCCACGTCG--CGAGGGGC-GACCATCATGAGGTCGGCGAGCTCGTC 190 Query 95328 GACCACTACCACGATGTAGGGG 95349 |||||| |||| || ||| ||| Sbjct 191 GACCACGACCAGGAGGTACGGG 212 >seq64 Length=260832 Score = 111 bits (122), Expect = 1e-19 Identities = 140/188 (74%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 95166 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95225 ||| | ||||| ||||| ||||| |||| || |||||| ||| || ||||||||||| Sbjct 1263 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGTTGCGTCGCCAG 1322 Query 95226 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCG 95283 || | ||| || ||||| || |||||||||||||| | |||| | || ||| | ||| Sbjct 1323 GATCAAATGGATGCCGGCCGCACGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CTTCG 1380 Query 95284 ACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 95343 | || |||||| | ||||||| ||||| || || ||||||| || ||||||||| Sbjct 1381 A--TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATG 1437 Query 95344 TAGGGGAG 95351 ||| || Sbjct 1438 GTGGGCAG 1445 Score = 100 bits (110), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 95455 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 95514 || || ||||||||| || ||||| || || || | ||| | | | ||| | |||| Sbjct 1636 TCCGTAACCACCGGCGCCAGCAGGTGCGGAATGCCTTCGTAGACGCTCATTTCGAGCATC 1695 Query 95515 TTCGGGTCGATCATGATGA-GCTTGACCCGATCAGGATT-GGCTCGGTAGAGCATGGAAA 95572 ||||||||||||| ||| | || | | ||| | ||| |||||||| || | Sbjct 1696 TTCGGGTCGATCAGGATCACGCGCGTGTGGG--AGGCGTCGGCCTTGTAGAGCAGCGACA 1753 Query 95573 CCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGT 95632 | ||| | |||||| | |||||||||||| ||||| | ||| ||||||||||||| Sbjct 1754 GGATCATGGCGTTGATCCCGACGGACTTGCCCGAGCCGGTCGTGCCCGCCACCAGCAGGT 1813 Query 95633 GGGGCATTTTGGCCAGGT 95650 ||||||| |||||||||| Sbjct 1814 GGGGCATCTTGGCCAGGT 1831 >seq59 Length=142688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 95172 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95231 ||||| ||||| ||||| |||| || ||||| || || ||||| || ||||||| || Sbjct 115936 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGGGTGGCCAGGATCAG 115877 Query 95232 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 95291 || || ||||| || ||||||||||| || | || | ||| | |||| | || Sbjct 115876 GTGGATGCCGGCCGCACGCGCCTTCTGCGCCAAACGTGCGATGAGCTCTTCGA---CCTT 115820 Query 95292 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGAG 95351 |||| | || |||||| | ||| |||| |||||||| | | ||||||| | || || Sbjct 115819 CTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGATGAAGATCACGATGAACGGCAG 115760 >seq4407 Length=7959 Score = 86.0 bits (94), Expect = 4e-12 Identities = 187/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 95367 GTGGCGCACGCCGGCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCC---ACGGTGAG 95423 || |||||||||| | | ||||| ||||| ||||| ||||||||| ||||| Sbjct 276 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 220 Query 95424 CCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGG 95483 ||| ||||| || |||| | || ||||| || || ||| | || || || Sbjct 219 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 160 Query 95484 GATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCG 95543 || |||| || | ||||||| ||||||||| ||||||||||| || | | | Sbjct 159 AATGCCGTCATAGATCGACAGTTCCAGCATCTTCGGATCGATCATGATCAGGCGGCACTG 100 Query 95544 ATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCC 95603 || || | ||||| |||| || | | ||| | ||||||| ||| || || Sbjct 99 TTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTACC 40 Query 95604 CGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTT 95642 ||| ||||||| || || |||||||| || ||||| || Sbjct 39 CGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346381998765726