Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq109 309 5e-79 seq916 277 3e-69 seq54 264 2e-65 seq723 118 2e-21 seq378 111 3e-19 seq1151 93.3 7e-14 seq250 91.5 2e-13 seq16 91.5 2e-13 seq120 86.0 1e-11 seq19 86.0 1e-11 >seq109 Length=136801 Score = 309 bits (342), Expect = 5e-79 Identities = 342/452 (76%), Gaps = 14/452 (3%) Strand=Plus/Minus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAG- 35510 ||||||| || ||||||||||| || || ||||| || |||||||| || | |||||| Sbjct 5076 GGGTCACGCCGGTCTGGCCCTGATACTTGCCGCCACGGTCCTTGTAGGACGTCTCGCAGA 5017 Query 35511 -----TCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACAC 35565 |||| ||| || ||| ||||||||||| ||||| |||||||| || || | | Sbjct 5016 TATCGTCCTTGTCGGCCTGGAAGAACAGCATCTGGGCCACGCCTTCGTTGGCATAGATGC 4957 Query 35566 GCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTT 35625 |||||||||| || ||||| ||||| ||||| |||||||| ||||||||||| || | Sbjct 4956 GCGCCGGCAGCGGCGTGGTGTTACTGAATTCCAGGGTCACATGCCCTTCCCACTCCGGCT 4897 Query 35626 CCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACA 35685 ||||||| ||||| ||||||||||| || |||||||||||||||||||| |||| |||| Sbjct 4896 CCAGCGGGGTCACATTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACA 4837 Query 35686 CCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGT 35745 |||| ||| || |||||| ||||||||||| || || ||||| ||||| |||||||||| Sbjct 4836 CCACCAGGGTGTCGCGCGGGATGCGGAAGTACTCCACGGTGCGCGCCAGCGCGAAGCTGT 4777 Query 35746 TCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCTGCAGGCACTTG---GGATCGAAGT 35802 | |||||||| ||||| || | || | || | | || || ||||||| Sbjct 4776 TGGGCGGAAT---GATGCACTCGTCGCCCACGATGTCCACGAAGCTGCCCGGGTCGAAGT 4720 Query 35803 TCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA- 35861 ||| || || || | | | ||||||||||||||| || | |||| || |||| Sbjct 4719 GCTTGGGGTCGACGATGGTGGAGTTGATGTTGGTGAACACCTTGAACTC-GCGCGAGCAG 4661 Query 35862 CGCACGTCATAACCATACGACGAGTTGCCGTA 35893 ||||||||||| || || ||| ||||||| Sbjct 4660 CGCACGTCATAGCCGTAGCTGGAGGTGCCGTA 4629 >seq916 Length=47865 Score = 277 bits (306), Expect = 3e-69 Identities = 314/416 (75%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || ||||| || ||||| || || | |||||| || ||||| || Sbjct 44087 CTGGCCCTGATACTTGCCGCCACGGTCCTTATAGGACACTTCGCACTCTTCGTCGGATTC 44028 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 ||| ||||||||||||||||| |||||||| ||||| | ||||||| | |||| || Sbjct 44027 GAAGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATTTTTGCCGGCAAGGTGGTGGT 43968 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| || || || |||||||| || || |||||||||||||||||||| Sbjct 43967 GTTGGAGAACTCCAGGGTGACGTGCCCTTCCCATTCCGGCTCCAGCGGCGTCACGTTGAC 43908 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || ||||||||||||||||| || |||| || | ||||| || ||||| Sbjct 43907 GATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAGGCAGATAGTCAGGACATTACGCGG 43848 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCT 35764 || |||||| ||||||| ||||| ||||| || ||| ||| ||||| || | | | Sbjct 43847 GATACGGAAGAATTCGACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGGATGATGCAGAC 43788 Query 35765 GTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTGCGC 35823 ||| ||| | || | | | || || |||||||| |||||||| || ||| Sbjct 43787 GTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCG 43729 Query 35824 TGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGTCATAACCATA 35878 ||||||||||||||| || | |||||||||| ||| || ||||| || || || Sbjct 43728 AGTTGATGTTGGTGAACACCTTGAACTCATCGGC-GCAGCGTACGTCGTAGCCGTA 43674 >seq54 Length=176950 Score = 264 bits (292), Expect = 2e-65 Identities = 369/509 (72%), Gaps = 14/509 (3%) Strand=Plus/Plus Query 35452 GGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGT 35511 |||| || || |||||||| ||||| || |||||||| || ||||||| | |||||| Sbjct 118400 GGGTGACGCCGGTCTGGCCTTGGTACTTGCCGCCGCGGTCGCGGTACGAGGTCTCGCAGA 118459 Query 35512 CCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCG 35571 | ||||| || || | ||||||||||| || ||||| ||||| | |||| Sbjct 118460 CTTCGTCGCTTTCCAGGAACAGCATCTGGGCGCAGCCTTCACCGGCGTAGATCTTGGCCG 118519 Query 35572 GCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCG 35631 |||| || |||||| ||| ||||| || || || |||||||| || |||||||||| Sbjct 118520 GCAGCGGCGTGGTGTTGGAGAATTCCAGCGTGACGTGGCCTTCCCATTCGGGTTCCAGCG 118579 Query 35632 GCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGA 35691 | ||||||||||||||||| || |||||||||||||||||||| |||| || | | Sbjct 118580 GGGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCAGATGGTCA 118639 Query 35692 GGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCG 35751 ||||| |||||||||||||||||||||| |||||||| ||||| ||||| ||| |||| Sbjct 118640 GGACGCTGCGCGGAATGCGGAAGTATTCCACCGTGCGGGCCAGCGCGAACGAGTTGGGCG 118699 Query 35752 GAATCAGGATGCTGTCAGCCTT--AACCGGCTGCAGGCACTTGGGATCGAAGTTCTTCGG 35809 |||| | | | ||| |||| || | | | ||| | ||||| |||||||| Sbjct 118700 GAATGATGCAGACGTCGCCCTTGAAATCCACGAACGAGCCTTCG--TCGAAATTCTTCGG 118757 Query 35810 ATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGCACGT 35868 ||| || | | | ||||||||||||||||| | | || ||||| ||| ||||||| Sbjct 118758 ATCGACGATGGTGGAGTTGATGTTGGTGAAGATCTTGAATTCGTCGGC-GCAGCGCACGT 118816 Query 35869 CATAACCATACGACGAGTTGCCGTACGAGATAACG-TGCTGACCGTCGATG---TTGCGC 35924 | || || || | |||||| || | ||| ||| | ||| | || |||| Sbjct 118817 CGTAGCCGTAGCTGCTGGTGCCGT---AGCTGACGATGC-GCCCGCCATTGGCCGTGCGG 118872 Query 35925 ACTTGCGACTCTTGAAAGGGTTCGATCAT 35953 || || | ||| ||||||||||||||| Sbjct 118873 ACCTGACCCGCTTCAAAGGGTTCGATCAT 118901 >seq723 Length=14336 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 13943 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 13884 Query 120288 CCTGATGCCGGCACCATA 120305 |||| ||||||||||||| Sbjct 13883 CCTGGTGCCGGCACCATA 13866 >seq378 Length=37917 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || |||| ||||||||||||||||||||||||||||| || || | || || || || | Sbjct 23229 GTTCCAGGCGTGCGATGATTTCGGAGTTCATGCTGCGGTGATGATTGCGAGCCACCTCGG 23288 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||||| Sbjct 23289 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGCTG 23347 >seq1151 Length=22315 Score = 93.3 bits (102), Expect = 7e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 122605 CGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCGAG 122664 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 9458 CGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCGAA 9517 Query 122665 TCCAACACGACCCACCAGTTT 122685 ||| ||||||||||||| ||| Sbjct 9518 TCCCACACGACCCACCATTTT 9538 >seq250 Length=59172 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 186128 AGTTGCTGACGCACTTGGTTGACGTGGTTGGAGTAGATATGCGCGTCGCCGAACGTGTGG 186187 || |||| ||| | |||| |||||||||||||| | |||||||||||| | || || Sbjct 46302 AGCTGCTCGCGCGCCTGGTCAACGTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGC 46361 Query 186188 AACAGCTTGCCTGATGCCAGGCCGAATGCCTGTGCCAGCATGTGCGTCATGATAGAGTAG 186247 | | | ||| |||| ||| ||||| |||| |||||| || | | | |||| Sbjct 46362 ACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAG 46421 Query 186248 AAGCCGAAGTTAAAAGGCACGCCGAGGAAGAAATCCCCGCTACGCTGATAGAGCTTGCAG 186307 | ||| ||| || |||||||| ||||||| || ||||| ||||| || | || |||| Sbjct 46422 CTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAG 46481 >seq16 Length=55361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 122603 TTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGTTCG 122662 || |||||||||||||||||||||||||| ||||||||| ||||||| |||||| Sbjct 54122 TTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTTCG 54181 Query 122663 AGTCCAACACGACCCACCAGTTT 122685 | ||| ||||||||||||| ||| Sbjct 54182 AATCCCACACGACCCACCATTTT 54204 >seq120 Length=487886 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 400903 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 400849 >seq19 Length=879724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 120235 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 826823 TAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCATTGGTTCGATCCC 826877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825810184465080