Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq3473 327 5e-85 seq90 95.1 5e-15 >seq3473 Length=4258 Score = 327 bits (362), Expect = 5e-85 Identities = 776/1156 (67%), Gaps = 61/1156 (5%) Strand=Plus/Plus Query 55781 GACGACGAGACGCTCGCGCAGGC--ACAGCAGATCGCTGATCTGCCTTTCGTTCATCCGC 55838 ||||| |||| ||||| ||||| ||| || | | || ||| ||| | || |||| Sbjct 1541 GACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCAT--GCCGTTCATCCACCCGC 1598 Query 55839 ACGTGGCGCTGATGCCCGACGCGCATTACGGCAAGGGCTCAAGCGTCGGCACGGTGATCC 55898 || |||| |||||||| |||||||| ||||||||| | | |||||| |||| |||| Sbjct 1599 ACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCC 1658 Query 55899 CGACTGAGGGCNNNNNNNNNNNNNNCGCGGTGGGCGTCGATATCGGTTGCGGCATGATCG 55958 |||| ||| ||| || |||||||| ||||| ||||| ||||||| Sbjct 1659 CGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCG 1718 Query 55959 CCGCGCGCACCGTGTACACGGCCGCCGACCTTGAGGGCCGCCAGCTCGCCGATCTGCGGG 56018 ||| || || || |||| |||| | || || || | ||||||||| || |||| Sbjct 1719 CCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGG 1778 Query 56019 CGTCGATCGAGTCAGCCATTCCGATGAGCGCCGGGGGCTACAAC---AAGAGCCTGGATC 56075 | ||||||| ||||| || || ||||| | |||||| ||| | ||| Sbjct 1779 AGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAACCGCAAGGTCGTGGCCA 1838 Query 56076 GGTTCGCGTTCACCGGCCCTCGCCTGGACTGGCTGCAGCTCGTCGCTAC---CCGCTTTG 56132 |||| |||| | || || | |||| |||||||| || | | |||| Sbjct 1839 C---CGCGGA-ACCGCGCATCACCGAG-CTGGA-GCAGCTCGCCGAGAAGAACGGCTT-- 1890 Query 56133 AGGTCGACCTGTCGCACT-CGCCG--AAATGGCGTGAGCAGCTCGGCACCCTCGGCGGCG 56189 ||||| | |||| | ||||| || |||||| |||| | ||||| ||||| | Sbjct 1891 ----CGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAG 1946 Query 56190 GTAACCATTTCATCGAGCTGTGCCTCGATCACCTTGACCGGGTGTGGCTGTTCCTGCACT 56249 | ||||| ||||||||| ||| ||||| | || || ||||| |||||||||||||||| Sbjct 1947 GCAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACT 2006 Query 56250 CCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGGCATATCTCTGCGGCGCAGGGGT 56309 | || ||||| ||||||||||||||||||||| || || ||| | | || ||| || Sbjct 2007 CGGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGG- 2065 Query 56310 ATTGCCAGGCGCAAGGGCTGCA-----CGTCCCGCACCGCGACCTCGCGTACCTCGTCGA 56364 | || |||| || | || | | ||||| ||| |||||| || ||||| ||||| Sbjct 2066 CTGGCGAGGC---AGTGGTGGATCGACCTTCCCG-ACCCCGACCTGGCATACCTGGTCGA 2121 Query 56365 GGGCACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGCGGTGGGCGCAGCGGTTCGCG-T 56423 |||||| |||||| ||||||| || |||||||||||||| |||| |||||| | Sbjct 2122 GGGCACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCT 2181 Query 56424 ACTACAACCGCGCCGAGATGATGGACCGTTTCGCG-CAGGCGTTCCGGCATTGGATCGG- 56481 || ||||| | ||||||||||| ||||| || ||||||| | |||| Sbjct 2182 GCT-GAACCGGGAGGAGATGATGGA-----TCGCGTCA-----TCCGGCA-GGTGTCGGA 2229 Query 56482 ---CGCCGACGCCCCGATCGACGAGCTGGTCGTCGAGACGATCAACACGCATCACAACTA 56538 | || ||||| ||||||| | | ||| |||||| || ||||||| Sbjct 2230 GTTCCTCGGAACCCCGGTCGACGAACAG------GAGCGCATCAACTGCCACCACAACTT 2283 Query 56539 CACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAGGGTGCGATCGA 56598 ||| || |||| |||| ||| |||||||| || | || ||||| || ||| | Sbjct 2284 CACCGAGTCGGAGAAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCA 2343 Query 56599 CGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCATGGGCACTTGCTCGTATGTCGT 56658 ||| ||| ||| | |||||| || ||||| ||||| || ||| || || || Sbjct 2344 GGCGGACGCCGGTCGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT 2403 Query 56659 -GACGGGCAAGGGCAATCCCGAGGCGCTGCATTCTGCGCCGCACGGCGCCGGTCGCCGGT 56717 || |||| ||| | || || ||||| | || | |||||||| ||||| || || Sbjct 2404 GGAAGGGC-TCGGCGACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGT 2462 Query 56718 TCTCGCGCGCCAAGGCCCGAAAGCTGTTCACGGTCGACGACCTCGCCGACCGTATGCAGG 56777 ||| ||| | ||| || | |||||| |||| | || || ||| || Sbjct 2463 ACTCCCGCTCGGCGGCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCGATGACGG 2522 Query 56778 GCATCGAGTACCGGCACGGCGAGGCGTGGGTCGATGAGATTCCCGACGCCTACAAGCCGA 56837 ||||||||| ||| || ||| || | |||| ||||| || | || |||||||||| Sbjct 2523 GCATCGAGTTCCGTGACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGA 2582 Query 56838 TTGACGTCGTGATGGCCGACGCCGACAGCCTGGTGACGATCGACGCCGAGCTGCGCCAGG 56897 | ||| |||||||| || |||| | | || || ||||| | |||||| ||| Sbjct 2583 TCGACCAGGTGATGGCGGATGCCGCCGGACTCGTATCGATCCGGCACACGCTGCGGCAGA 2642 Query 56898 TGCTCAACGTCAAGGG 56913 | ||||||| ||||| Sbjct 2643 TCGTCAACGTGAAGGG 2658 >seq90 Length=95466 Score = 95.1 bits (104), Expect = 5e-15 Identities = 502/774 (65%), Gaps = 62/774 (8%) Strand=Plus/Minus Query 56168 CAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGATCA--CCTTG 56225 ||| ||||||| ||||||||||| ||||| ||||||||| | ||||| ||| | || | Sbjct 69802 CAGATCGGCACACTCGGCGGCGGCAACCACTTCATCGAGATCTGCCTGGATGAAACCGGG 69743 Query 56226 ACCGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGC 56285 | ||||||| || | |||||| ||| ||||| || ||||||| ||||| | | | Sbjct 69742 GC--GGTGTGGGTGATGCTGCACAGCGGCTCGCGCGGTACCGGCAACCTGATCGGC-ACC 69686 Query 56286 GGCAT-ATCTCTGCGGCGCAGGGGTA--TTGCCAGGCGCAAG---GGCTGC-ACGTCCCG 56338 | | ||| ||||| | | | | ||| ||||| | |||| | || | ||| Sbjct 69685 TACTTCATCGAGCAGGCGCGCGAGCAGCTGGCCCGGCGCGTGCTCGGCTTCCACCTGCCG 69626 Query 56339 CACCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCGA-GTTCGACCGCTACCTCGTCGA 56397 || ||||| || | | || | ||||| | || |||||| |||| | | Sbjct 69625 GACAAGGACCTGGCCTTCTTCATGCAGGGCGA-GCCGTTGTTCGATGACTACGTGCAGGC 69567 Query 56398 GCTGCGGTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCGC 56457 || |||||||||| | ||| | | ||||||| | |||||||| || | Sbjct 69566 CGTGTCGTGGGCGCAGGATTACGCCCGCGAGAACCGCGAGGCGATGATGGCGCGGGT--- 69510 Query 56458 GCAGGC---GTTCCGGCATTGGATCGGC-GCCGACGCCCC-GATCGACGAGCTGGTCGTC 56512 || ||| | | || | || |||| ||||| | || | | || |||||| Sbjct 69509 GCTGGCCGAGATGCGCC--TG---CGGCTGCCGAAGTTCCAGTTGGAGAAGCTGG----- 69460 Query 56513 GAGACGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTG 56572 || | ||| || ||||||||| ||||| ||| ||||| ||| ||| || Sbjct 69459 ----CGGTGAACTGCCACCACAACTACGTGCAGACCGAGACCCACGGTGGCGAGGAGCTG 69404 Query 56573 TGGTTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGC 56632 | ||||||||||||| ||| || ||||| || || | | ||| | || || ||| Sbjct 69403 CTGGTGACCCGCAAGGGGGCGGTCAGCGCGCGCGCCGGCGAACTGGGGATCATCCCGGGC 69344 Query 56633 AGCATGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGAGGCGCTGCA-TTC 56691 ||||||||||| || ||| ||||| |||||||||||| ||||| | || | Sbjct 69343 AGCATGGGCACGCGCAGCTATATCGTGCGTGGCAAGGGCAATGCCGAGAGCTTCCACAGC 69284 Query 56692 TGCGCCGCACGGCGCCGGTCGCCGGTT--CTCGC-GCGCCAAGGCCCGAAAGCTGTTCAC 56748 ||| | ||||| ||||| ||| | | |||| |||| ||| || ||| | |||| Sbjct 69283 TGCAGC-CACGGTGCCGGCCGCGTGATGAGTCGCAGCGC---GGCGCGCCAGCAGATCAC 69228 Query 56749 ---GGTCGACGACCTC--GCCGACCGTATGCAGGGCATCGAGTACCGGCACGGCGAGGCG 56803 || | | ||| | | |||||| ||| | | || | ||| | | | |||| Sbjct 69227 CCTGGCCCAGCACCGCGAGGCGACCG--CGCA---CGTGGAATGCCGCAAGGATGCGGCG 69173 Query 56804 TGGGTCGATGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCCG-A 56862 | ||||||| |||| ||||||||| |||| |||| |||||||||| ||| | Sbjct 69172 GTGATCGATGAATCCCCCGCAGCCTACAAGTCGATCGACGCGGTGATGGCCG-CGCAGCG 69114 Query 56863 CAGCCTGGTGACGATCG---ACGCCGAGCTGCGCCAGGTGCTCAACGTCAAGGG 56913 | ||||||| | | | || || |||||||||||| | | ||||||| Sbjct 69113 CGACCTGGTGGAGGTGGTGCACACC---CTGCGCCAGGTGGTGTGCATCAAGGG 69063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199741257338469