Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023502.1 Length=109558 Score E Sequences producing significant alignments: (Bits) Value seq40 91.5 1e-13 seq83 86.0 4e-12 >seq40 Length=145790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 31238 TGGAACGGCACGTTCAAGTGGGCCTGGACGGATAACCCGGCGTGGGTGCTCTACGACATC 31297 ||| |||| || |||||| ||||||||| | |||||||| |||||| |||||||| | Sbjct 97523 TGGGACGGTACCTTCAAGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTG 97464 Query 31298 ATGACCAATGATCGCTTCGGTCTTGGCGAGGATATCGACGCCTCGCAGG-TGGACAAGTG 31356 || | ||||||||||| || || ||| | |||| || || |||||||||| Sbjct 97463 ATCAGCAATGATCGCTATGGCCTGGGCACCCGCGTGCCCGCC-GGCTGGCTGGACAAGTG 97405 Query 31357 GTCGCTCTACGAGATCG--CGCAATACGCAGACCAGAACGTGCCCGATGGCCGTGGCGGC 31414 | || ||| |||| | ||| || || ||| ||| || ||| ||| ||||||| Sbjct 97404 GGGCCTGTACCAGATTGGCCGCTAT-TGC-GACGAGATGGTCGACGACGGCTTTGGCGGC 97347 Query 31415 AACAAGCCGCGCTTCACGTTCAACG 31439 || | ||||||||||| | ||||| Sbjct 97346 AAGGAACCGCGCTTCACCTGCAACG 97322 >seq83 Length=313169 Score = 86.0 bits (94), Expect = 4e-12 Identities = 196/286 (69%), Gaps = 12/286 (4%) Strand=Plus/Minus Query 31237 CTGGAACGGCACGTTCAAGTGGGCCTGGACGGATAACCCGGCGTGGGTGCTCTACGACAT 31296 |||| |||||||||||||| ||| ||||| ||||| || || |||||| | | |||| | Sbjct 6273 CTGGGACGGCACGTTCAAGACGGCGTGGACCGATAATCCTGCCTGGGTGTTTTTCGACCT 6214 Query 31297 CATGACCAATGATCGCTTCGGTCTTGGCGAG-GATATCGACGCCTCGCAGG-TGGACAAG 31354 || || || |||| ||| || |||||| | || || | || || |||||||| Sbjct 6213 GGTGGGGAACGACCGCTACGGCCTGGGCGAGCGGGTTC--CGGCCGGCTGGCTGGACAAG 6156 Query 31355 TGGTCGCTCTACGAGATCGCGCAATACGCAGACCAGAAC--GTGCCCGATGGCCGTGGCG 31412 ||| || ||| |||||| || ||| ||| |||| ||| ||||||| |||| Sbjct 6155 TGGGGCCTGTACCAGATCGGGCGCTACTGCGAC--GAACCGGTGGACGATGGCTTCGGCG 6098 Query 31413 GCAACAAGCCGCGCTTCACGTTCAACGGCGCGATG--TACGATCAGCAGGAGGCATTCGA 31470 | || ||||||| || || | ||| | | || |||| | || || || | | Sbjct 6097 GAAAGGAGCCGCGGTTTACCTGCAATGTCTACCTGCAGACGA-CTGC-CGACGCGTACCG 6040 Query 31471 CGCCATCCAGCAAATCGCTTCCGTGTTCCGTGGCATGGCCTATTGG 31516 || | | ||| | | || |||||||| || |||||||| || ||| Sbjct 6039 CGTCGTTCAGGATCTGGCGTCCGTGTTTCGAGGCATGGCGTACTGG 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350416690894193