Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq401 217 4e-52 seq406 203 9e-48 seq846 150 5e-32 seq1084 113 1e-20 seq172 111 5e-20 seq648 109 2e-19 seq35 93.3 1e-14 seq2553 87.8 5e-13 seq332 82.4 2e-11 >seq401 Length=77198 Score = 217 bits (240), Expect = 4e-52 Identities = 235/307 (77%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 30085 GTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGT 30144 |||||||| |||||| || |||||||| | | ||||| | || |||| || || Sbjct 66342 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC---CACTCGCGGGT 66398 Query 30145 TCTGAGTGAACCCTCGACGTA-CAGTTGCTGACCCTTCTTTACG-TGCTGCCCGACGATC 30202 | ||| | || |||||||| || | ||| ||||| | | | || || |||| Sbjct 66399 GCGGAGAGTGCCTTCGACGTAGCACTGGCT--CCCTTTTCGCAGATACTCACCCGCGATT 66456 Query 30203 TCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCG 30262 || || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| Sbjct 66457 TCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCG 66516 Query 30263 GTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCG 30322 |||||||| || |||||||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 66517 GTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCG 66576 Query 30323 TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTA 30382 || || | ||||| ||||||||| || ||| ||||||| || ||||| |||||||| Sbjct 66577 TTCGGGGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTG 66636 Query 30383 ACGCCTC 30389 ||||||| Sbjct 66637 ACGCCTC 66643 >seq406 Length=38937 Score = 203 bits (224), Expect = 9e-48 Identities = 501/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Minus Query 1072 TGGGAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCC----ATT--CTGGTTCGTGTTC 1125 ||||| ||||| ||||||| || || |||| || | ||| |||| | | ||| Sbjct 25632 TGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTATCTGGGTGGCGTTT 25573 Query 1126 GGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGC 1185 |||||||| || | ||||| || || ||||| || |||| || |||| | || ||| Sbjct 25572 GGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGC 25513 Query 1186 TGGAAGACCAGGCAGATCGATAGTCG-ATCGGCCAAGATGACCAACAAAGACCTAATCAA 1244 |||||| | |||||| || || || | || ||| || ||||| | | | | Sbjct 25512 TGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGC-ACAAACAAGCAGCAGCTGCA 25454 Query 1245 GCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCT 1304 | |||||| | ||||||||||||||| ||||||| | ||||| || || || || | Sbjct 25453 GAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGAT 25394 Query 1305 GTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCGATGCCGCAATGGC 1364 ||||| | || || || || || ||| || ||||| || | || ||| Sbjct 25393 CTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAA 25334 Query 1365 ACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCGGCGTTGACCCGTC 1424 || || || || | | | ||| ||||| || || |||||||||| |||||| | Sbjct 25333 GCGGGTGGTTACCGCCGGGCAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGC 25274 Query 1425 GTGGTCAGGCGATGACGAATTTGCGATCTATATGCGGCAGGGGCTGCATAGCAAGCTGAT 1484 || || || | ||| || | ||| || |||||||||||||||| ||||| || | Sbjct 25273 GTATTCCGGAGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCT 25214 Query 1485 CGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCAGCGTATTGCCCAGCTGGA 1544 | || | | ||| | ||||| | | |||||| |||| || ||| | | || Sbjct 25213 CTGGACCGGCAACAAGACCACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGA 25154 Query 1545 AGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCAT--TGT- 1601 |||||||||| |||| |||||||| ||| ||||||| || || ||||| || | || Sbjct 25153 AGACCAGTACCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTC 25094 Query 1602 CAGCGCGGCTCGAGCAATGGGGC-GCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCAA 1660 || || | || || |||||| | | ||| ||| | | |||||| || | ||| | Sbjct 25093 CATCG-GTGACG-GC--TGGGGCAGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGA 25038 Query 1661 GCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATG-AAGGAATGGCTC 1719 |||||| ||||| || ||||| || ||||| | ||| | || ||| ||||| Sbjct 25037 CCGATCCCCAGATGCTAAATAAGCGCGGAGAGATGTTCAAC-AGCTGCAAGACGTGGCTG 24979 Query 1720 AAGGCTGGCGGCGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCTGAGTAT 1779 ||| ||||||| ||| |||||||| |||| || | || | || ||| | ||||| Sbjct 24978 AAGCTAGGCGGCGCGCTGGACGACCAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTAC 24919 Query 1780 CGCGTCAAGCTCGACGGCAAGATCGT 1805 |||| | | |||||||||||||| Sbjct 24918 AAAGTCAGGGTGGACGGCAAGATCGT 24893 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 4937 GATTGCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTG-GTACGAGG 4995 ||||| || || || ||||| |||||| || ||| ||||||| | ||| |||| Sbjct 20475 GATTGTCGAACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTA-GAGG 20417 Query 4996 GCAACCTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACC 5055 |||||||||| || || |||| ||| || | || |||| || || | | Sbjct 20416 GCAACCTGCCAACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGC 20357 Query 5056 GCAAGCTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCAT 5115 || ||||||| ||||||| ||| |||||||| ||||||| || || || | | Sbjct 20356 GCTTGCTGAACTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCT 20297 Query 5116 GCGGCATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGC-GATGCTGAATGGCAAC 5174 |||| || || ||| | | | ||||||| | |||| ||| ||||| ||||| Sbjct 20296 GCGGGATGCTGGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGAT-CTGAACGGCAAT 20238 Query 5175 ACCGCAGGTTTCCGCCTGTCTGAGTCGCGTGCATTCATGGAAGCAATGAACCAG 5228 || || | ||||| ||||| || ||||||||||| |||| ||||||||| Sbjct 20237 ACTGCTGAATTCCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAG 20184 >seq846 Length=12855 Score = 150 bits (166), Expect = 5e-32 Identities = 300/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Plus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 4617 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 4676 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 || ||||| ||||| || || || || | |||||| ||||| |||||||| || Sbjct 4677 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 4736 Query 31354 GGTG--TTC--------CGC-------------TT-------GCACTCGGCCATGTACTC 31383 |||| ||| ||| || ||| || |||| |||| Sbjct 4737 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 4796 Query 31384 AGTCGCGCTGATGGCATGGCTGCGGTCCTTCCGATAGATCTTGCAGGTGCA---TTCGGT 31440 || ||| ||| | ||| |||||||||| || || ||| ||| ||||| ||| | Sbjct 4797 GGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATT 4856 Query 31441 TCCCTGCTGGTCCATTGAGAATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCG 31500 |||||| || || ||||| ||||| ||||| |||| || |||||||| || Sbjct 4857 GTCCTGCT----CA-----AAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCG 4907 Query 31501 AGCCCAGCCATCCACGCCAACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTA 31560 | ||||||||| ||||| || || || ||||||||||| | ||| || ||||| ||||| Sbjct 4908 GGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTA 4967 Query 31561 CAACTCCTTGGTGAAGGGGTTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCAT 31620 | || || || | || || || |||||||| || |||||||||| |||| | Sbjct 4968 AATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAA 5027 Query 31621 CTGCGAATCATTGACCTGGCCCTTGAA 31647 ||||| ||| || | | ||| || || Sbjct 5028 CTGCGCATCGCTGGCATCGCCTTTAAA 5054 >seq1084 Length=8902 Score = 113 bits (124), Expect = 1e-20 Identities = 220/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 30067 CTGCAT-CTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTCCT 30125 |||||| |||||| |||||||||||||| || || || ||||| || | |||||| | Sbjct 8565 CTGCATTCTGCCC-TGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTT 8507 Query 30126 GCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGACCCTTCTTTA 30185 || |||| ||| ||| || ||| |||| ||| | ||| || ||| | Sbjct 8506 TTTCC---CACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCA 8450 Query 30186 CGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGC 30245 | || || |||| || || | ||||| || || || |||||||||||||| Sbjct 8449 GATACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCT 8390 Query 30246 GCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGT 30305 || || ||| || || |||||||| |||| ||| || || || ||| ||| | Sbjct 8389 TTTCGACTTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGAT 8330 Query 30306 TGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAA 30365 |||| || ||||| ||||| || | ||||||||||| || || ||| | |||||| Sbjct 8329 TGGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAA 8270 Query 30366 CCAGAATGACTTTGTTAACGCC 30387 ||| || ||||| || ||||| Sbjct 8269 CCAAGATCACTTTATTTACGCC 8248 >seq172 Length=24343 Score = 111 bits (122), Expect = 5e-20 Identities = 146/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253 ||| |||| || | | ||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1392 CCGGCGATTTCACCGAGCTTGCCGAAGAACACCACGCGGTGCCATTCGGTACGCTCCTGC 1451 Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAG-CTCTCGCTGGTGGCGAGGGTGATGTTGGTCAC 30312 || | ||| | ||||||||| | | | || | ||||||| ||| ||||| ||| | Sbjct 1452 TGGTTGCC---ATCCTTGTCCTTGCGGACGCT-GGTGGTGGCCAGGCTGATGCGGGTGAT 1507 Query 30313 CGCATTGCCG--TTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGA 30370 ||| ||||| ||||| || | | |||||||| |||| |||||| ||||| Sbjct 1508 CGCCATGCCGCCTTGGGTGTACTTCACG--TCCGGGTCGTTGCCGAGGTTGCCGACCAGG 1565 Query 30371 ATGACTTTGTTAACGCC 30387 |||||||| || | ||| Sbjct 1566 ATGACTTTATTGATGCC 1582 >seq648 Length=65085 Score = 109 bits (120), Expect = 2e-19 Identities = 226/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || ||||| || ||||||||||| | ||| || || ||||| || | Sbjct 40370 CCGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCT-- 40313 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||| | || |||| || ||| || || |||| ||| | ||| Sbjct 40312 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 40256 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || | ||| ||||||| || | ||| ||||| | | ||| |||| Sbjct 40255 AACCTTTGCGCAGGTATTCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGT 40196 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||||||||| ||| | ||||||||| |||||||| |||| |||||||| | Sbjct 40195 GCCATTCGGTTTTCTCGACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCG 40136 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 | || | | ||||||||| || || ||||| |||| |||||| ||| || || | Sbjct 40135 CCAGACTCAGGTTGGTCACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGC 40076 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAACGCC 30387 || | || |||| |||||||||||||| || Sbjct 40075 CGCATGTACCGACCAATATGACTTTGTTAACCCC 40042 >seq35 Length=166930 Score = 93.3 bits (102), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 30224 ACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTC 30283 || ||||||||||||||||| || | | || |||| | ||||||||||||| | Sbjct 115902 ACGACGCGGTGCCATTCGGTTTCTTCGCGCTTCTCGCCGCTGGCCTTGTCCTTCCAGGAC 115961 Query 30284 TCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCC 30343 | ||||||||| || |||||| | || |||| ||| | ||||| |||| Sbjct 115962 GAGGTGGTGGCGATGGACATGTTGCAGATTGCGGCCCCGTCGGGGCTGTAGCGGACTTCC 116021 Query 30344 GGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAAC 30384 ||||| | ||| | |||||| || ||||||||||||||||| Sbjct 116022 GGGTCGCGACCCAGGTTGCCCACGAGAATGACTTTGTTAAC 116062 >seq2553 Length=3545 Score = 87.8 bits (96), Expect = 5e-13 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 30173 TGACCCTTCTTT-ACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCG 30231 ||| |||| ||| | | ||| || | || || |||||||| | ||||| | ||| Sbjct 2493 TGAACCTTTTTTCAAATACTGACCAGCTATTTCTGCCAACTTGCGATAGAACGTGATGCG 2434 Query 30232 GTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGT 30291 |||||||| ||| |||| || |||| | | ||||| ||||| ||| | || Sbjct 2433 ATGCCATTCAGTGATTTCCTTCCTCTCGCCGCTGTTTTTGTCTTTCCACGATTCGGTAGT 2374 Query 30292 GGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACC 30351 || | | ||||||||| ||| || | ||| || ||||| ||||||||||| || || Sbjct 2373 CGCAACGCTGATGTTGGCCACTGCTTCGCCATTCGGCATGTAGCGAGTTTCAGGATCTTG 2314 Query 30352 ACCGACGTTGCCAACCAGAATGACTTTGTTAAC 30384 |||| |||||| || | ||| || ||||| || Sbjct 2313 TCCGAGGTTGCCGACGATAATTACCTTGTTGAC 2281 >seq332 Length=28461 Score = 82.4 bits (90), Expect = 2e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 231 GGCAAGGACGTTGCTGACGCTCGAG-TGGTTGATGCGTTGTACCACCGAGCAATGGGGTT 289 ||||| | | | || ||||| |||| ||| ||| | ||| || || || |||| | Sbjct 8997 GGCAAAGCCATGGCAGACGC-CGAGGTGGCCGATAGGCTGTTTCAGCGCGCTCTGGGCTA 9055 Query 290 CAGCCATGTCGACACGGATATCCGCGTTGTAGATGGCGCAATCGTTGAGACGCCGATCGT 349 || |||| ||| |||||||| || || |||| ||||| ||||| | | Sbjct 9056 CACGCATGCCGAGGACGATATCCGGGTATGCGACGGCGTGATCGTCACCACGCCCACCAC 9115 Query 350 CAAGCACTATGCCCCCGACACTACCGC-TGCAATCTTCTGGCTGAAGAACCGGCGCCCTG 408 |||||| || | || || || || || |||| | ||||||||||||||||||||||| | Sbjct 9116 CAAGCAGTACCCGCCGGATACGACGGCCTGCATT-TTCTGGCTGAAGAACCGGCGCCCGG 9174 Query 409 ATGAGTGGCGCGACAAGC 426 || ||||||||||||| Sbjct 9175 ATCTCTGGCGCGACAAGC 9192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145620539907888