Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1164 150 1e-30 seq833 91.5 1e-12 seq114 86.0 5e-11 seq65 86.0 5e-11 >seq1164 Length=91045 Score = 150 bits (166), Expect = 1e-30 Identities = 409/621 (66%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 282328 |||| |||||| ||||| ||||||| ||||| ||||| || | || ||||| Sbjct 37239 AGAGAAACATCGAACGTTCCTCCACCCAGGTCAAAGATAAGCACCTGGTGCTCCTTGTCC 37180 Query 282329 T--GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 || ||| | || ||||| || | || || ||||| ||||| || ||||| | || Sbjct 37179 GACGGCTTTC--CCAGTCCATAGGCCATGGCGGCGGCAGTCGGTTCGTTGATAATGCGCA 37122 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 |||| || || |||||| ||| || || || ||||| || | ||| || ||||||| Sbjct 37121 AAACGTTGAGTTTGGCAATTACTCCGGCGTCCTTGGTGGCCTGGCGTTGGGAGTCGTTAA 37062 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTG 282506 | || || || || || | |||||| | ||| || ||| | || || || | Sbjct 37061 AGTAGGCGGGTACGGTGACAACGGCGCTGGATACCGGTTCTCCGAGGTAGGCCTCGGCAG 37002 Query 282507 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT 282566 | | ||||| || | || | ||| || || |||| |||||||| ||| ||||| || Sbjct 37001 TCTCCTTCATCTTGGTCAACACCATCGAAGAGATTTCCTCTGGAGAGAATTCCTTGGTTT 36942 Query 282567 CATTTTGATATGATACTTCAAAATATGGTT--TATTACCAACATTA-ATAACTTTAAATG 282623 || || || |||| | ||||| | || | | || ||||||| Sbjct 36941 CACCTTTGTAGACGACTTGGATGTATGGACGGTCTTGGGGGGTCTGGACCACCTTAAATG 36882 Query 282624 GCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 282683 |||| | |||||| || || || || | || || | | |||||| ||||| | Sbjct 36881 GCCAGTGTTTCATGTCGGACTGGACGACCGGCTCGGAGAACTTGCGACCAATCAATCGCT 36822 Query 282684 TTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAA 282743 | || ||||| || || |||| ||||| | ||| |||| | ||||| | || |||| Sbjct 36821 TGGCGTCAAAGATGGTGTTGGCAGGATTCATTGCCACTTGGTTCTTGGCAGAGTCGCCAA 36762 Query 282744 TCAGATGTTCTGTCTCTGTAAATGAA----ACATATGATGGAGTTGTGCGATTACCTTGA 282799 ||| |||| || ||| | |||| ||||| || || || || | |||||| || Sbjct 36761 TCA----TTCTCTCGGTGTCATTGAATGCCACATAGGAAGGTGTGGTTCTATTACCCTGG 36706 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 ||||| ||||||||||| || ||||| | | || | |||||| | || ||| Sbjct 36705 TCATTGGCAATAATTTCCACACGTCCATTCTTCAGGACCGCAACACAAGAGTAGGTAGTT 36646 Query 282860 CCTAAATCAATACCAATAGCA 282880 || |||||||| ||||| ||| Sbjct 36645 CCCAAATCAATTCCAATGGCA 36625 >seq833 Length=35181 Score = 91.5 bits (100), Expect = 1e-12 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || |||||||| | |||||||| || || || | || || | | |||||| Sbjct 19946 TTGAATGGCCAGTGCTTCATATCGGACTGGACGACGGGATCGGAGAACTTGCGACCAATC 19887 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 || || || || || || | ||| ||||| || || | ||| | || | ||||| || Sbjct 19886 AAACGCTTGGCGTCGAATACAGTGTTGGTGGGGTTCATCGCAACCTGGTTCTTGGCGGCG 19827 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||||||||| | | || | || ||||| | ||||| || || || | ||| ||| Sbjct 19826 TCTCCAATCAAACGCTCAGAATCGGTAAAGGCGACATAGCTAGGTGTAGTTCTATTTCCT 19767 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 || || || |||||||||||||| |||| ||||| ||||||| | | |||||| Sbjct 19766 TGGTCGTTGGCAATAATTTCAACACGGTCATTCTGCCAGACACCTAAATTATTAAAAG 19709 >seq114 Length=372606 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 86113 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 86172 |||||||| || ||||| |||||||||||||||||| | ||| | ||||| || Sbjct 293888 CCTAAACCATAGGCAAGGCTTGCTGCAGTTGGTTCATTGACTATACGTAATACATCCAAT 293947 Query 86173 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 86232 || || | ||| | | |||| | || || || | ||| |||||||||||| || || Sbjct 293948 CCGGCCAGTTTGCCGGCATCACGTGTAGCCTGACGCTGGCTGTCATTAAAATAAGCAGGA 294007 Query 86233 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAA 86267 |||||||| ||||| |||| ||| ||| ||| Sbjct 294008 ACAGTAATGACTGCCCGGTTAACTGGTGTTTTTAA 294042 >seq65 Length=380327 Score = 86.0 bits (94), Expect = 5e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 34259 GAAATTTCTACGGAATCTGTTCTCATATAAGTAATATATCCGCCTTCATATAATTTTTGT 34318 |||| | ||| ||||| || | |||||| ||||| | |||| |||||||||| ||||| Sbjct 120433 GAAAGATTTACAGAATCGGTACGCATATAGGTAATTTTACCGCTTTCATATAATCTTTGT 120374 Query 34319 GCTGTTTTCATGGTAGAATCAATA--GACATACCAAATTTTCTGTTGGCTTCTTGTTGCA 34376 || | ||| || | ||| || | ||||| ||| ||| ||||| ||||| | Sbjct 120373 GCAACCTGCATTGTTC--TGGATACGGAGAAACCAAGTTTCCTGGAAGCTTCCTGTTGTA 120316 Query 34377 ATGTAGAAGTAGTAAAGGGAGGAGCCGGAGATCTT 34411 |||||||||||||||| |||| || ||| |||| Sbjct 120315 ATGTAGAAGTAGTAAAAGGAGCTGCAGGATTTCTT 120281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740123387941902