Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq19 131 2e-25 seq504 82.4 7e-11 >seq19 Length=879724 Score = 131 bits (144), Expect = 2e-25 Identities = 309/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 50276 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50335 ||| ||||||||||| ||||| || ||| ||| ||||| | || || ||| ||||| Sbjct 583681 TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTT 583740 Query 50336 TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50395 | || || | | |||| |||| | ||||| || || || ||||| || || Sbjct 583741 CTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGA 583800 Query 50396 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCG 50455 ||||||||| | || || || ||||| || ||||| || || || || | || Sbjct 583801 GTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCT 583860 Query 50456 CGTAAATGAAAAATTATCATACGAAACAATTT-TGGACATGTTCAAAGAAGCCGTCGACA 50514 | |||| ||| | | | | ||| || |||| || || || || || || | Sbjct 583861 CAAAAAT--AAACTGAGCC-AGGAAGTCGTTCATGGA-ATTATCCGCGACGCGGTAGAAA 583916 Query 50515 TCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACA 50574 ||||||| || ||| | || || || || || || || || | || ||||| ||| | Sbjct 583917 TCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAAC 583976 Query 50575 TGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACA-ACCG 50633 |||||| |||| |||||||||||||||||||||| | || | | ||||| | ||| Sbjct 583977 TGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACCA 584036 Query 50634 AAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAA 50693 ||||| ||| |||| || || ||| |||||| | | || || || | |||||| Sbjct 584037 AAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 584095 Query 50694 ACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50730 || || || || || | |||||| || || || ||||| Sbjct 584096 ACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 584133 >seq504 Length=56252 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 54859 || || | ||||||||| || |||||||| | || | ||| |||| || || || | Sbjct 35825 GCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCTCCGTGCTCC 35884 Query 54860 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 54919 | || || || || || | ||||| || | ||||||||| || |||||||||| Sbjct 35885 TTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTGTCGCCAAAC 35944 Query 54920 TCGTGTACGTGAAAACCGTGCAGTCCTTTC 54949 | ||| ||||| || ||||||||||| ||| Sbjct 35945 TGGTGGACGTGGAATCCGTGCAGTCCCTTC 35974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488480935076400