Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023696.1 Length=157568 Score E Sequences producing significant alignments: (Bits) Value seq3559 93.3 4e-14 seq340 89.7 5e-13 seq9125 87.8 2e-12 seq375 84.2 2e-11 >seq3559 Length=12351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118180 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 118239 || |||||||||||||| | | || ||| ||||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 118240 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 118299 ||||||| || | ||| |||||| ||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 118300 TTCCCCGACATCGACGTCGACTTC 118323 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq340 Length=55687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 118179 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 118238 |||||| |||||||| |||| | ||||||||||| ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 118239 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 118296 ||||||||||| |||| ||||| |||||||||| || ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 118297 GACTTCCCCGACATCGACGTCGACTTC 118323 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 >seq9125 Length=594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 154336 CGGCCTGCTGCAGCGCAAGAGCTTGATCGAGGACCCGCAGATTCTCATCGCGGCCACCGG 154395 ||| |||||||| |||||| | | || || ||||||||||| ||| | | ||| Sbjct 29 CGGGCTGCTGCAACGCAAGGGATACGCGGATGATCCGCAGATTCTGTTCGGTGGTATCGG 88 Query 154396 TGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCCGACAACCGCAT 154455 || ||| | ||| | |||||| || || ||||||||||||||||| | ||| || Sbjct 89 CGACGCCGATTCCGATCAGGTGCCACTACAAGTCGGCCAGTTCGAGTCGGGTAACGCGAT 148 Query 154456 CGACG-CCATGATCGAGGCCATGTACCTCGAAGGCTTCGGGGGCGGGCAGGCACACGAGA 154514 |||| || ||| | |||| | |||||| ||| ||| || || ||| || | Sbjct 149 GGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGCAACGGTGGTGGACAGAAGTCGGAAA 207 Query 154515 CCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCACACC--TACCTGGAGCCGTGGCACAA 154572 ||| || | || || || ||| |||| || |||||| ||| ||| | ||| | || Sbjct 208 GCTATGAATTGGCAGCATATTTCATGGCGCGCCACACCAGTAC--GGATGCCTGGGAGAA 265 Query 154573 GCAGGGTCGCAAGGGCTATGCCATCTTCATCGGTGACGAG 154612 || || | || ||||| | || ||||||| |||||| Sbjct 266 GCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCGACGAG 305 >seq375 Length=82088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 118171 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 118230 |||| ||| ||||| ||||| || |||| || || |||||||| | |||| ||||| Sbjct 20612 TGCCCGTG-GGCCCCGGCCGGGGTTCCGGCGCCGGTTCGCTGGTGGCGTACGCGCTGGGC 20554 Query 118231 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGAC 118290 || ||| | ||||||||| |||||| || ||||||||||||| | || || || Sbjct 20553 ATTACCGACCTGGACCCGATCCGCTACGACTTGCTGTTCGAGCGCTTCCTGAATCCCGAG 20494 Query 118291 CGCCCCGACTTCCCCGACATCGACGTCGACTTC 118323 || | | | |||||| |||| |||||||| Sbjct 20493 CGGGTCTCCATGCCCGACTTCGATATCGACTTC 20461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504024528333760