Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq161 228 3e-54 seq5896 114 4e-20 >seq161 Length=252982 Score = 228 bits (252), Expect = 3e-54 Identities = 296/407 (73%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 188785 ACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTA 188844 ||||| | || |||||| | || || | ||| | || | || |||||||| ||| | Sbjct 236030 ACTGGAACTGGCAAAACACTTTTGGCAAAGACAATTGCAAAAATATTACATGTTCCTTTT 236089 Query 188845 GCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAAC 188904 ||| | |||||| || ||||||||| || |||||||| |||||||||||||||| Sbjct 236090 TGTATTTGTGATGCTACAGTTTTAACAGAGGCAGGTTATGTTGGTGAAGATGTGGAAA-- 236147 Query 188905 GTAT--TGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAA 188962 |||| | |||||| | || || || ||||| ||| | | | || |||||||||| Sbjct 236148 GTATCCTAACCCGTTTACTGCAGGCGGCCGATTATGATGTGGCTTCTGCCGAACGTGGAA 236207 Query 188963 TTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCC 189022 |||| || |||||||| || |||||| |||| | ||| || | | || |||||| Sbjct 236208 TTGTTTACATCGATGAGGTTGATAAAGTTGCACGTAAAAGCGATAATCCTTCAATTACCA 236267 Query 189023 GAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTG 189082 | |||||||| || ||||| || |||||||| || | || ||| ||||||||||||| | Sbjct 236268 GGGATGTATCCGGAGAAGGTGTTCAGCAAGCGCTACTTAAGATCCTTGAAGGTACAGTGG 236327 Query 189083 CGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATA 189142 ||| || |||||||| || || ||||| || ||| | || ||||| || | ||| Sbjct 236328 TGAATGTCCCTCCTCAGGGCGGACGTAAGCATCCTGATCAGAAAATGATTCCTGTGAATA 236387 Query 189143 CAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAA 189189 ||| ||| || || |||||| ||| || || |||||||| ||||| Sbjct 236388 CAAATAACATTTTATTTATTTGTGGAGGTGCATTTGATGGGATTGAA 236434 >seq5896 Length=518 Score = 114 bits (126), Expect = 4e-20 Identities = 218/319 (68%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || |||||||||||||| ||||||||||| |||||| | | | | | ||| | Sbjct 60 ACTGAAGCTGGTTATGTGGGTGAAGATGTTGAAAACATCATCCAGAAACTTTTGCAA--A 117 Query 188929 GCTG--ATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATA 188986 ||| | ||||| ||||| ||| || || ||||| || || |||||| | || | Sbjct 118 ACTGTAACTACGAAGTCGAACGCGCGCAAAAAGGCATTGTTTACATTGATGAAATCGACA 177 Query 188987 AAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTAC 189046 | ||| | | || || || | |||| |||||||| || || || |||||||| || | Sbjct 178 AGATTTCACGCAAGTCGGACAATCCATCGATTACCCGCGACGTCTCCGGCGAAGGCGTGC 237 Query 189047 AGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTC 189106 | || ||||| | ||| | || |||||||| | || || || || |||||||||| Sbjct 238 AACAGGCTTTGCTGAAACTGATCGAAGGTACGATGGCATCGGTGCCGCCACAAGGTGGTC 297 Query 189107 GTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTG 189166 | || || || |||| || | | |||| || || || || ||| |||| || | Sbjct 298 GCAAGCATCCGAACCAGGACTTCGTGCAAATCGACACCACCAACATCATGTTCATCTGCG 357 Query 189167 GTGGAGCGTTTGATGGTCT 189185 |||| || ||||| || || Sbjct 358 GTGGCGCATTTGACGGCCT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591699766872896