Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq3473 306 1e-78 seq90 102 3e-17 seq46 98.7 4e-16 seq2859 89.7 2e-13 seq164 82.4 3e-11 >seq3473 Length=4258 Score = 306 bits (338), Expect = 1e-78 Identities = 758/1126 (67%), Gaps = 66/1126 (6%) Strand=Plus/Plus Query 52000 TGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGT 52059 |||||||| | || |||||| | || || ||||| ||||||||| ||||||| || || Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 52060 CTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACA 52119 | || || | |||||||| || | |||||| ||||||||||||| ||||| ||||||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 52120 TCGGCTGCGGCATGATCGCCACACTGACCGCATTCACCCAGGA-CGACATCGCCGGCCGC 52178 |||||||||| ||||||||| | || | |||| | |||| |||| ||| ||| || Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCA-CGAGGAGCGACGTCGACGGTCGT 1759 Query 52179 GACCTGGCCGCGCTGCGTGAGTCGATCGAGTCGGCGATCCCCATGTCGGCCGGCGGATAC 52238 || |||| || || ||| ||||||| || |||||| ||||||||||| | ||| Sbjct 1760 CGGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTAC 1819 Query 52239 AA---CAAGAGCCT--CGACCG-GTACCCGTTCACCGCCGGCCGGATCGAGCATCTTGAA 52292 || |||| | | | |||| | | ||| || | ||| | | ||||| || | Sbjct 1820 AACCGCAAGGTCGTGGCCACCGCGGAACCGCGCATCACCG---AGCTGGAGCAGCTCGCC 1876 Query 52293 GACGAAGCGGAACGCCGCAACGTCGACCTGTCAC---ACTCCCCGAAGTGGCGTGAACAA 52349 || ||| ||||| | |||||| | | | || || ||| |||||| || Sbjct 1877 GA-GAA---GAACG-----GCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAG 1927 Query 52350 CTCGGCACACTCGGCGGCGGCAACCATTTCATCGAACTGTGCGTCGACCACCGCGGCTGC 52409 | ||||| ||||| |||||||| |||||||| ||| ||||| | | || | Sbjct 1928 TTGGGCACGCTCGGTTCAGGCAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGG 1987 Query 52410 GTGTGGCTGTTCCTGCACTCCGGTTCACGTGGCGTCGGCAACAAGATCGCCCAGAAGCAC 52469 || ||||||||||||||||| || || || ||||||||||||||||||||| | | ||| Sbjct 1988 GTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCAC 2047 Query 52470 ATCAAGATCGCGCAAGCCGAATGCGA-CCTGTACGGCATCGAACTGCCCGGCGGCAACAA 52528 ||| |||| | ||| | |||| | || | ||||| || |||| || Sbjct 2048 ATCGCCGTCGC-CCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCG------ACCC 2100 Query 52529 GGATCTGGCGTACCTCGTCGAAGGTGAACCGTCGTTTGACGCG-TACCTGAATGAGCTGC 52587 || ||||| ||||| ||||| || |||| | || || || ||| | ||||||| Sbjct 2101 CGACCTGGCATACCTGGTCGAGGGCACACCGGAG-TTCACCCGCTACATCCGGGAGCTGC 2159 Query 52588 GTTGGGCGCAACAGTTCGCACTGTTCAACCGCGACGAAATGATGGACCG-GT--ACCGGC 52644 | ||||| || || ||||| ||| | ||||| || || |||||||| || || ||||| Sbjct 2160 GGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCGCGTCATCCGGC 2219 Query 52645 AGGCGTTCGCACGCTGGATGGGCATCGGTGTCGATGAGGCGCCGGTCGTCGAAATCGCCG 52704 ||| | ||| | | | |||| | ||||||| |||| | | Sbjct 2220 AGGTG-TCGGA--------GTTCCTCGG---------AACCCCGGTCGACGAA----CAG 2257 Query 52705 GCGAACGTGTCAACGCGCACCACAACTACACGGTGCAGGA-ATGCGTCGACGGTGAGCTG 52763 || || ||||| |||||||||| ||| | | ||| | || | |||| ||| | Sbjct 2258 --GAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGC-ACTACGGGAAGCAG 2314 Query 52764 GTGTGGGTGACCCGCAAGGGTGCCAT-CAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCC 52822 ||||||||| | || ||||| ||||| ||| || || | ||| || ||||| ||||| Sbjct 2315 GTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCG-GGCCTCATCCC 2373 Query 52823 GGGAAGCATGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACCCGCAGGGTCTGCA 52882 || ||||| ||||| || || || || || ||| |||||||| ||| | Sbjct 2374 CGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCCGCAGTCGCTGAA 2433 Query 52883 GTCTGCGCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCAC 52942 || | || ||||| ||||| || || |||||| | || || | ||||| Sbjct 2434 CTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGGCGGACCTTCAC 2493 Query 52943 CGTCGACGACCTGGCTGACCGTATGCGCGGCATCGAGTACCGCCACGGTGAGGCGTGGGT 53002 |||| | ||| || ||| |||||||||| ||| || || || | | Sbjct 2494 GCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACACCGATGCCTTCAT 2553 Query 53003 CGACGAAATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGCCGGGGAACT 53062 |||||| |||||| | || ||||||||||||||| |||||| || |||| | ||| Sbjct 2554 CGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGGATGCCGCCGGACT 2613 Query 53063 CGTGTCCGTTGACGCTGA-ACTGCGTCAAATCGTTAACGTCAAGGG 53107 ||| | || | || | ||||| || ||||| ||||| ||||| Sbjct 2614 CGTAT-CGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 2658 >seq90 Length=95466 Score = 102 bits (112), Expect = 3e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 52000 TGCCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGT 52059 |||||||||| ||| || || | ||||| |||| |||||| |||||||| | Sbjct 70158 TGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGGCCA 70099 Query 52060 CTGTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACA 52119 | || || | || ||||| ||||||||||| |||| || ||||||||||| || |||| Sbjct 70098 CCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGGACA 70039 Query 52120 TCGGCTGCGGCATG 52133 |||||||||||||| Sbjct 70038 TCGGCTGCGGCATG 70025 Score = 82.4 bits (90), Expect = 3e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 52029 ATGCCCGACGCGCACGTCGGCAAAGGTTCGTCTGTTGGTACCGTCATCCCCACCCGCGGC 52088 |||||||||| |||| | ||||| || | | | || | || | |||||| |||| Sbjct 11497 ATGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCATCGGC 11556 Query 52089 GCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGCTGCGGCATGATCGCCAC 52141 || ||||||| || || || || || |||||||||||||||||||||||||| Sbjct 11557 GCGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCGCCAC 11609 >seq46 Length=239904 Score = 98.7 bits (108), Expect = 4e-16 Identities = 198/288 (69%), Gaps = 22/288 (8%) Strand=Plus/Minus Query 52771 TGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCGGGAAGCA 52830 ||||||||||||| || | ||||| ||| ||||||| ||| | || ||||| |||| Sbjct 144393 TGACCCGCAAGGGCGCGGTGAGCGCCAAGGCGGGCGAGCTGGGCATCATTCCGGGCAGCA 144334 Query 52831 TGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACCCGCAGGGTCTGCA--GTCTGC 52888 ||||| || ||| |||| |||||||||||||||| | | || || |||| Sbjct 144333 TGGGCGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAG-CTTCATGAGCTGC 144275 Query 52889 GCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCACCGTCGA 52948 | |||||||||||||| | | | ||| ||||| || ||||||| ||| || | Sbjct 144274 AGC-CACGGCGCCGGCCGCAAGATGAGCCGCACCAAGGCCAAGAAGCTGTACACGGTGGC 144216 Query 52949 CGACC---TGGC--TGACCGTATGCGCGGCAT----CGAGTACCGCCACGGTGAGGCGTG 52999 ||||| |||| ||||| | ||| || || | || | ||||| |||| Sbjct 144215 CGACCAGGTGGCCGCGACCGAAGGCGTGGAATGCCGCAAGGA-CGCCAACGTGA------ 144163 Query 53000 GGTCGACGAAATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCA 53047 ||||||| |||||| || |||||| ||||||| |||||||| Sbjct 144162 --TCGACGAGATCCCGATGGCGTACAAGGACATCGACGCCGTGATGCA 144117 >seq2859 Length=8594 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 3499 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTG 3555 >seq164 Length=17117 Score = 82.4 bits (90), Expect = 3e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCC 649 |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 446 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201421045893144