Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023733.1 Length=154573 Score E Sequences producing significant alignments: (Bits) Value seq3559 89.7 5e-13 seq9125 87.8 2e-12 seq29 87.8 2e-12 seq3096 84.2 2e-11 seq340 84.2 2e-11 >seq3559 Length=12351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 114468 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTCG 114527 || |||||||||||||| | | || ||| | ||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 114528 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 114587 ||||||| || | ||| |||||| ||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 114588 TTCCCCGACATCGACGTCGACTTC 114611 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq9125 Length=594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 151227 CGGCCTGCTGCAGCGCAAGAGCTTGATCGAGGACCCGCAGATTCTCATCGCGGCCACCGG 151286 ||| |||||||| |||||| | | || || ||||||||||| ||| | | ||| Sbjct 29 CGGGCTGCTGCAACGCAAGGGATACGCGGATGATCCGCAGATTCTGTTCGGTGGTATCGG 88 Query 151287 TGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCCGACAACCGCAT 151346 || ||| | ||| | |||||| || || ||||||||||||||||| | ||| || Sbjct 89 CGACGCCGATTCCGATCAGGTGCCACTACAAGTCGGCCAGTTCGAGTCGGGTAACGCGAT 148 Query 151347 CGACG-CCATGATCGAGGCCATGTACCTCGAAGGCTTCGGGGGCGGGCAGGCACACGAGA 151405 |||| || ||| | |||| | |||||| ||| ||| || || ||| || | Sbjct 149 GGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGCAACGGTGGTGGACAGAAGTCGGAAA 207 Query 151406 CCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCACACC--TACCTGGAGCCGTGGCACAA 151463 ||| || | || || || ||| |||| || |||||| ||| ||| | ||| | || Sbjct 208 GCTATGAATTGGCAGCATATTTCATGGCGCGCCACACCAGTAC--GGATGCCTGGGAGAA 265 Query 151464 GCAGGGGCGCAAGGGCTATGCCATCTTCATCGGTGACGAG 151503 || || | || ||||| | || ||||||| |||||| Sbjct 266 GCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCGACGAG 305 >seq29 Length=97445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 91237 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91296 ||||||||||| ||||| ||| |||||||| ||| ||||| || ||||||||||||| Sbjct 16047 ACGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGA 16106 Query 91297 ATCCTGTCACCCCGAC 91312 |||||||| ||||||| Sbjct 16107 ATCCTGTCTCCCCGAC 16122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 91238 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91297 |||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||| Sbjct 15833 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 15892 Query 91298 TCCTGTCACCCCGAC 91312 ||||||| ||||||| Sbjct 15893 TCCTGTCTCCCCGAC 15907 >seq3096 Length=9392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 91237 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91296 ||||||||| | ||| |||| || |||||| ||| ||||| ||| ||||||||||| | Sbjct 5388 ACGGGGTGTGGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAA 5329 Query 91297 ATCCTGTCACCCCGAC 91312 |||||||||||||||| Sbjct 5328 ATCCTGTCACCCCGAC 5313 >seq340 Length=55687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 114467 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTAGTCACCTACGTCATGGGCATCACCTC 114526 |||||| |||||||| |||| | |||||||| || ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 114527 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 114584 ||||||||||| |||| ||||| |||||||||| || ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 114585 GACTTCCCCGACATCGACGTCGACTTC 114611 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494441765508360