Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023743.1 Length=47180 Score E Sequences producing significant alignments: (Bits) Value seq83 104 7e-18 seq1338 86.0 2e-12 >seq83 Length=313169 Score = 104 bits (114), Expect = 7e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23487 TACAGGCCCCACTTATCAATCTCTACACCAAGCTCCCGCTGGTCCAGGCCGTAACGCTGA 23546 |||||||||||||| || | | | | | |||||| | |||||||||| || | Sbjct 6145 TACAGGCCCCACTTGTCCAGCCAGCCGGCCGGAACCCGCTCGCCCAGGCCGTAGCGGTCG 6204 Query 23547 CTAACCACCAGGTCATATAAAACCCAGGCTGGATTATCAGACCATGCCATTTTAAAAGTG 23606 | |||||||||| | || |||||||| |||||||| | ||| ||| | || || ||| Sbjct 6205 TTCCCCACCAGGTCGAAAAACACCCAGGCAGGATTATCGGTCCACGCCGTCTTGAACGTG 6264 Query 23607 CCATCCCAGGTTCCGCTATAAGTACGAGTCTCTGGGTTGTAGTTTGTTGGTACACGGATA 23666 || |||||||| ||| |||| |||||||| |||| ||||| | || || ||||| Sbjct 6265 CCGTCCCAGGTGCCGATATACACCCGAGTCTCCGGGTCATAGTTGCTCGGCACGCGGATG 6324 Query 23667 AT 23668 || Sbjct 6325 AT 6326 >seq1338 Length=18756 Score = 86.0 bits (94), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 28223 ACCGCCGTTTGCGTATCCGCGCATCAACTTGTACAGGTTGTCTACGCCAATCCTTGAAGT 28282 ||| ||| | || || |||||||||| | ||| || || | |||||||||| || Sbjct 12027 ACCACCGGTGGCATAGCCGCGCATCAGCCGGTAGAGATTCCCCACGCCAATCCGGCTGGT 11968 Query 28283 TGCCTCCTTCGTAAACACGAATTCACCACGATGCACCGTACCAGCTGGTTCATACTTACC 28342 ||||||||| || || || ||||||||||| || || | || ||||| ||||| || || Sbjct 11967 TGCCTCCTTTGTGAAGACAAATTCACCACGGTGAACAATCCCCGCTGGCTCATATTTGCC 11908 Query 28343 TCCGTTACCAGTGTAGCCACCAGATGCAAA 28372 ||| | || || | || || | |||||| Sbjct 11907 GCCGGTTCCCGTAAATCCTCCGGTTGCAAA 11878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150835900253508