Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq3473 262 2e-65 seq90 100 1e-16 seq46 86.0 2e-12 >seq3473 Length=4258 Score = 262 bits (290), Expect = 2e-65 Identities = 758/1148 (66%), Gaps = 44/1148 (4%) Strand=Plus/Plus Query 53964 TCGACGACCAGACTCTCGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTTTATCCGC 54023 ||||||| |||| ||||| |||||||| | ||| |||| ||| | | |||| Sbjct 1539 TCGACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCATGCCGTTCATCCACCCGC 1598 Query 54024 ATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCC 54083 | |||| |||||||| || ||||| |||| ||||| | |||||| |||| |||| Sbjct 1599 ACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCC 1658 Query 54084 CAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTGCGGCATGATCG 54143 | || ||||| | ||||| || |||||||||||||| || || ||||| ||||||| Sbjct 1659 CGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCG 1718 Query 54144 CGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCAAGCTGTCGGATCTGCGGG 54203 | | || || ||| |||| || ||| | || || | ||| | || || |||| Sbjct 1719 CCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGG 1778 Query 54204 AGTCGATCGAGTCGGCTATCCCGATGAGCGCCGGGGGATACAA---CAAGAGCCTG--AA 54258 || ||||||| || ||||| || ||||| | ||||| |||| | || | Sbjct 1779 AGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAACCGCAAGGTCGTGGCCA 1838 Query 54259 CCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCTCGTCGCTACCCGGTTCGA 54318 ||| || ||| |||| | | |||| |||||||| || | | || Sbjct 1839 CCG--CGGA----ACC-GCGCATCACCGAGCTGG-AGCAGCTCGCCGAGA---AGAACGG 1887 Query 54319 CGTCGACCTGTCTC---ACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGG 54375 | |||||| | | | || || ||| ||||| |||| | |||||||| || || Sbjct 1888 CTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGG 1947 Query 54376 TAATCACTTCATCGAGCTGTGCCTGGACCACCTCGACCGTGTGTGGTTGTTCCTGCACTC 54435 || |||||||||||| ||| | || | ||||| || || ||| ||||||||||||| Sbjct 1948 CAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTC 2007 Query 54436 CGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAG-GGCT 54494 || ||||| || ||||| ||||||||||| | | ||||| | ||| ||| ||| Sbjct 2008 GGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGGC- 2066 Query 54495 ATTGCCAGGC-GAACGGGCTGCACGTGCCGCACAAGGATCTGGCGTACCTCGTCGAGGGC 54553 | || |||| | || | || | || || || ||||| ||||| ||||||||| Sbjct 2067 -TGGCGAGGCAGTGGTGGATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGGC 2125 Query 54554 ACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGTTGGGCGCAGCGGTTTGCG-TACTA 54612 || |||||| ||||||| || || |||| ||||| |||| || ||| | || Sbjct 2126 ACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT- 2184 Query 54613 CAACCGCGCCGAAATGATGGACCG----ATTCGAGCAGGCGTTCAGGCATTGGGTCGGGG 54668 ||||| | || |||||||| || || || ||||| || | | | |||| Sbjct 2185 GAACCGGGAGGAGATGATGGATCGCGTCATCCG-GCAGGTGT---CGGAGTTCCTCGGAA 2240 Query 54669 CCGACCAGGGCGCCGAGCTGGTCGTCGAGACCATCAACGCGCACCACAACTACACGCAGA 54728 | || || || ||| | | ||| ||||||| |||||||||| ||| || Sbjct 2241 C---CCCGGTCGACGAACAG------GAGCGCATCAACTGCCACCACAACTTCACCGAGT 2291 Query 54729 AGGAGCGGCACGGCGACCGTGACGTGTGGCTGACCCGTAAGGGTGCGATCGACGCGAACG 54788 |||| |||| || | |||||| || | || ||||| || ||| | ||| ||| Sbjct 2292 CGGAGAAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACG 2351 Query 54789 AGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCA 54848 ||| | |||||| || || || |||||||| ||| || || || ||| || Sbjct 2352 CCGGTCGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGC 2411 Query 54849 AGGGCAATCCCGAGGCGTTGTGCTCGGCGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCA 54908 ||| | || || || || ||| | ||||| ||||| || || || ||| ||| Sbjct 2412 TCGGCGACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCT 2471 Query 54909 CGAAGGCGCGCAAGCTGTTCACGGTCGACGACCT-CGAAGCGCGTATGACGGGCATCGAG 54967 || |||||| | |||||| |||| | || ||| ||| ||||||||||||||| Sbjct 2472 CGGCGGCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCG-ATGACGGGCATCGAG 2530 Query 54968 TACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTC 55027 | ||| | ||| || | |||||||||| || | || ||||||||||||||| Sbjct 2531 TTCCGTGACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAG 2590 Query 55028 GTGATGCACGACGCCGAGACGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTGAAC 55087 |||||| || |||| || || ||| | | |||||||||| || | ||| Sbjct 2591 GTGATGGCGGATGCCGCCGGACTCGTATCGATCCGGCACACGCTGCGGCAGATCGTCAAC 2650 Query 55088 GTCAAGGG 55095 || ||||| Sbjct 2651 GTGAAGGG 2658 >seq90 Length=95466 Score = 100 bits (110), Expect = 1e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 54030 CGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCCCAACCG 54089 || |||||||||| | ||| | || |||||| || ||||| ||||| | || ||| Sbjct 11492 CGGTGATGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCA 11551 Query 54090 AGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTGCGGCATGATCGCGGCCC 54149 ||||| | |||||||||||||| ||||| || || || |||||||||||||| ||| Sbjct 11552 TCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCGCCACCC 11611 Query 54150 GCACCACG 54157 |||||||| Sbjct 11612 GCACCACG 11619 >seq46 Length=239904 Score = 86.0 bits (94), Expect = 2e-12 Identities = 195/283 (69%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 54757 GCTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTC 54816 ||||||||| ||||| ||| | ||| || | ||| | || |||| | ||||||||| Sbjct 144395 GCTGACCCGCAAGGGCGCGGTGAGCGCCAAGGCGGGCGAGCTGGGCATCATTCCGGGCAG 144336 Query 54817 GATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCG-AGGCGTTGTGCTCGG 54875 |||||| || || ||||| |||||||||||| || | | || | || | | Sbjct 144335 CATGGGCGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAGCTTCATGAGCTG 144276 Query 54876 CGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCG 54935 | | || || || |||||| | | ||||| ||||| ||||||| |||||| | Sbjct 144275 CAGC-CACGGCGCCGGCCGCAAGATGAGCCGCACCAAGGCCAAGAAGCTGTACACGGTGG 144217 Query 54936 ACGACCTCGAAG-CGCGTATGACGGGCATCGAGTACCGCAAGGGCG-AGGCGTGGGTCGA 54993 ||||| | | |||| || ||| | || | |||||||| || ||| | |||| Sbjct 144216 CCGACCAGGTGGCCGCGACCGA-AGGCGTGGAATGCCGCAAGGACGCCAACGT-GATCGA 144159 Query 54994 CGAGATTCCCGA-CGCATACAAGCCGATCGACGTCGTGATGCA 55035 ||||| |||||| || |||||| ||||||| ||||||||| Sbjct 144158 CGAGA-TCCCGATGGCGTACAAGGACATCGACGCCGTGATGCA 144117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190805398067916