Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_024125.2 Length=168470 Score E Sequences producing significant alignments: (Bits) Value seq3870 91.5 2e-13 seq2070 82.4 8e-11 >seq3870 Length=345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 200/296 (68%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 44474 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTC 44533 ||||| |||||||| | |||||||||||||| || || |||||||| || || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 44534 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 44592 || ||| |||| | | | || | ||| || || || | | || || || ||||| | Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 183 Query 44593 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 44652 | |||| | | | ||| || ||| ||||| || ||| || | || |||||| Sbjct 182 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGAAT 123 Query 44653 CATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 44709 || || ||| |||| || ||| |||||| || |||||||| ||||| || Sbjct 122 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 66 Query 44710 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 44765 ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 65 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 >seq2070 Length=16073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 71115 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 71174 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 3130 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 3189 Query 71175 TAC 71177 ||| Sbjct 3190 TAC 3192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538906424935600