Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq3473 259 2e-64 seq2859 93.3 2e-14 seq164 84.2 9e-12 >seq3473 Length=4258 Score = 259 bits (286), Expect = 2e-64 Identities = 732/1122 (65%), Gaps = 58/1122 (5%) Strand=Plus/Plus Query 53479 TGCCATTCGTCTACCCGCACGTTGCGCTCATGCCCGACGCGCACGTAGGCAAAGGCTCAT 53538 |||| ||| || |||||||| | || || ||||| ||||||||| | ||||| || | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 53539 CCGTCGGCACAGTCATCCCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGACA 53598 | |||||| | |||||||| || | |||||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 53599 TCGGCTGTGGCATGATCGCCACACTGACCGCATTCGGTGAGGA-CGACATCGCCGGCCGC 53657 ||||||| || ||||||||| | || | ||| ||||| |||| ||| ||| || Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCAC-GAGGAGCGACGTCGACGGTCGT 1759 Query 53658 AACCTGGCCGAACTGCGCGACTCGATCGAGTCGGCGATCCCCATGTCGGCCGGCGGATAC 53717 || ||||| || || || ||||||| || |||||| ||||||||||| | ||| Sbjct 1760 CGGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTAC 1819 Query 53718 AACAAGAGCCTCAACCGGTACCCGTTCACCGCG---CCGCGCATCGAATACCTGGAAGAC 53774 ||| | ||| ||| | | ||||||| ||||||||| | ||||| | Sbjct 1820 AAC------CGCAA--GGT-CGTGGCCACCGCGGAACCGCGCATCACCGAGCTGGAGCAG 1870 Query 53775 CTCGCCGACCGCAACCGCGTCAACCTGTCGCACTCCCC---GAAGTGGCGCGAACAACTC 53831 |||||||| ||| || || ||| | |||| | | | ||| ||||| || | Sbjct 1871 CTCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTG 1930 Query 53832 GGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGCCGGCTG 53891 ||||| ||||| ||||||||||||||||| ||| ||||| ||| || ||| | Sbjct 1931 GGCACGCTCGGTTCAGGCAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTC 1990 Query 53892 TGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGCCCAGAAGCACATC 53951 |||||||||||||| || || || || || |||||||||||||||||| | | |||||| Sbjct 1991 TGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATC 2050 Query 53952 AAGATCGCGCAAGCCGAATGCGCCG-AGCATGGTG--TCGAACTGCCCGGCGGCAACAAG 54008 |||| | ||| | ||| | || ||||| |||| || |||| || Sbjct 2051 GCCGTCGC-CCAGCGGCTGGCGAGGCAG--TGGTGGATCGACCTTCCCG------ACCCC 2101 Query 54009 GATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGAGCTGCGT 54068 || || || ||||| ||||||||| |||| |||| | ||| || |||||||| Sbjct 2102 GACCTGGCATACCTGGTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGG 2161 Query 54069 TGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCG-GT--ACCGGCAA 54125 ||||| || || |||||| || | ||||| | ||||||||||| || || |||||| Sbjct 2162 TGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCGCGTCATCCGGCAG 2221 Query 54126 GCGTTCGCGCACTGGCTCGACATCGGTGTCGACGAGGCGCCAGTCGTCGAGATCGCCGGC 54185 | || || | | |||| | | |||||||| ||| Sbjct 2222 GTGT---CGGAGTTCCTCGGAACCCCGGTCGACGA----ACAG----------------- 2257 Query 54186 GAACGCGTCAACGCGCACCACAACTACACCACCCAGGAGCACATCAACGGTGAGCTGGTG 54245 || ||| ||||| |||||||||| |||| |||| | | |||| ||| |||| Sbjct 2258 GAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGGGAAGCAGGTG 2317 Query 54246 TGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGT-GAGCGTGGCCTCATCCCCGG 54304 |||||| | || ||||| |||||| ||| | |||| || || |||||||||||||| Sbjct 2318 TGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCG-GGCCTCATCCCCGG 2376 Query 54305 CAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCCGAAGGGCTGCATTC 54364 ||||| || ||||| ||||| || || ||| |||| | |||| | || Sbjct 2377 GTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCCGCAGTCGCTGAACTC 2436 Query 54365 CGCGCCGCACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGCACGCAAGCTGTTCACCGT 54424 | | |||||||| ||||| || ||||||||| | ||| || | ||||| Sbjct 2437 CTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGGCGGACCTTCACGCA 2496 Query 54425 CGACGACCTCGCAGACCGTATGCGCGGCATCGAATACCGGCACGGTGAGGCGTGGGTCGA 54484 |||| | || ||| ||| |||||||| | ||| || || || | |||| Sbjct 2497 CGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACACCGATGCCTTCATCGA 2556 Query 54485 CGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATGCACGACGCCGAAGACCTCGT 54544 |||||| || | || ||||||||||| ||| || ||| || |||| | ||||| Sbjct 2557 CGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGGATGCCGCCGGACTCGT 2616 Query 54545 GTCGGTTGACGTCGAGCTGCGTCAAATCGTCAACGTCAAGGG 54586 ||| | | |||||| || ||||||||||| ||||| Sbjct 2617 ATCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 2658 >seq2859 Length=8594 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 3497 GGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTG 3555 >seq164 Length=17117 Score = 84.2 bits (92), Expect = 9e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 828 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCC 883 ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 445 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200365178801634