Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq426 140 6e-28 seq396 134 3e-26 seq374 118 2e-21 seq1210 107 4e-18 >seq426 Length=101737 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | ||| ||||| || || ||||| ||||| ||||||| Sbjct 58 TACCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAG 117 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || ||||| || ||||| || ||||| | || || || |||| Sbjct 118 AAAGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAG 177 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || |||||||| || |||||| | || | Sbjct 178 GAATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCAGAACCCTCAA 237 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || |||||||| || | ||||||||||| || |||||| Sbjct 238 CCTCAAGGGTGATGGTCTTGCCAGTTAGAGTCTTTACAAAGATTTGCATT 287 >seq396 Length=82706 Score = 134 bits (148), Expect = 3e-26 Identities = 176/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | ||| ||||| || || ||||| ||||| ||||||| Sbjct 58 TACCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAG 117 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || ||||| || ||||| || || || | || || || |||| Sbjct 118 AAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAG 177 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || |||||||| || ||||| | || | Sbjct 178 GAATACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAA 237 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT---ATTATAT 82818 | || | || || |||||||| || | ||||||||||| || |||||| ||||||| Sbjct 238 CCTCTAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACAAAGATTTGCATTGTAATTATAT 297 Query 82819 TTT 82821 || Sbjct 298 ATT 300 >seq374 Length=102525 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| || || | ||| ||||| || || ||||| || || ||||| || Sbjct 876 ACCTCCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGA 817 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | ||||| || || || || || |||||||| || | |||||||| || || Sbjct 816 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGG 757 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||||||||| | || || || ||||| || || || || Sbjct 756 AATGCCCTCCTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAAC 697 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| || || | |||||||| || || ||||| Sbjct 696 CTCCAGAGTGATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 >seq1210 Length=15033 Score = 107 bits (118), Expect = 4e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || || ||||| || || || || | Sbjct 12691 TACCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 12750 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || || || ||||| || | ||||| || || | Sbjct 12751 AAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGG 12810 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || || || || ||||| || || | Sbjct 12811 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAA 12870 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||| | ||||||||||| || ||||| Sbjct 12871 CCTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981697289840853