Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_024787.1 Length=132541 Score E Sequences producing significant alignments: (Bits) Value seq153 136 3e-27 >seq153 Length=135117 Score = 136 bits (150), Expect = 3e-27 Identities = 613/964 (64%), Gaps = 8/964 (1%) Strand=Plus/Plus Query 98784 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 98843 || || ||| | |||||||| || || | || ||||| ||||| || || ||||| ||| Sbjct 56660 AGCGGCATCCTGAACTGGAATGACATCCCCTACCCGTCCTTCTACCGGGCCTACAAGGAG 56719 Query 98844 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 98903 | | || || | |||| | || || || || || |||||| |||| || ||| Sbjct 56720 CTGTCGACCAACTTCTGGATCCCCGACGAAGTGGACATGAAGGGCGACGCGCGCGGCTAC 56779 Query 98904 AACCACTT--ATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTA 98961 | | || || || ||| |||| | || || || ||||| || | || | Sbjct 56780 GGTGAGCTCAATGCGCGC--GAAAAGAATGCCTACGATTCGATCATCGGCCTGCTGGCCA 56837 Query 98962 CACTTGACTCACCCCAAACACGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCT 99021 | || ||||| || || || || || || || ||| | || ||||| ||| || | Sbjct 56838 CGCTCGACTCGCCGCAGACCCGCTTCATCTACAACGTGGCCGAGTACATCACCGACCCGG 56897 Query 99022 CCGTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATT 99081 ||| ||||| | | || ||||| | || || || | || || || ||||| || Sbjct 56898 CCGCGCATGCCAACGCCGCGATCATCGGCCAGCAGGAGGTGATCCACAACGAGAGCTACA 56957 Query 99082 CTTATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTA 99141 || ||||| ||||| || | | || ||||| || || || || || Sbjct 56958 GCTACGTACTGGCTTCCATCGCCGGGCTGGCCGACCAGAACCGCGTGTTCGAAATCGCCC 57017 Query 99142 GAACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCA 99201 | || || || || || | || || || || ||| |||| || ||||| |||| Sbjct 57018 GCACGCATCCCACCATCCTGGCGCGCAACCAGCCGATCATGCAGTCCTACGACGACTTCA 57077 Query 99202 TGAATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGG 99261 || | || || | |||| || | | | | || || || ||| | || | Sbjct 57078 TGCGCGAGAAGACCGCCGAGACCCTGATCCGGTCGCTGATCCAGTCGTCGATCCTGGAAG 57137 Query 99262 GTATTAATTTCTACAGCGGTTTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGA 99321 | || || ||||| ||| || || | ||||| ||||| || || || ||| |||| Sbjct 57138 GCATCAACTTCTATTCCGGCTTCGCGTTTTTCTACAACCTGGTCCGCCAGAACCGCATGA 57197 Query 99322 CGGGAACAGGTAAAATCATTAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTA 99381 | || || || || ||||| |||||||| || || || || | ||||| | ||||| | Sbjct 57198 CCGGCACCGGCAAGATCATCAGCTTCATCAACCGCGACGAACTGGCCCACACCAAGTTCA 57257 Query 99382 TTTCTGAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAA 99441 | || || || | || || | || || |||| | || || || | || | Sbjct 57258 TCAGCGAACTGATCCGCGCCATCATCGGCGAGAACCAGCAGCTTCAGGGCGACCAGCTCA 57317 Query 99442 ATGACTACGTGTATGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGCG-TGGTCTAGT 99500 | |||||| | | | | || |||||| | | ||| ||| | ||| ||| | | Sbjct 57318 CCGCTTACGTGCACGATGCATTCGAGCATGCCATCGCGCTGGAA-ACGCGCTGGACCGGC 57376 Query 99501 GAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 99560 ||||| || | ||||| || || || || ||||| || ||| | ||| || || || Sbjct 57377 GAGGTGCTGGACGGCATCGACGGCATCGACGTGGACGAGATGATCCGCTACGTGAAGTAC 57436 Query 99561 CGTGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCATACA-GA 99619 || || || || ||| || ||||| || || | |||| || | || | | Sbjct 57437 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGAAGCTGTA-CAGCGACACCAACGT 57495 Query 99620 AAATTCTATGACATGGATTAAAGCTTACGCCGATAATTTTACAGAAACAAAAACCGACTT 99679 || ||| | ||||| || || || ||||| ||||| || || || || |||||||| Sbjct 57496 CAACGTGATGCCGTGGATCAAGGCCTATGCCGACAATTTCACCGAGACCAAGACCGACTT 57555 Query 99680 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAATTTAGATAATGGGTTCGATGACTT 99739 ||||| ||||| ||| | ||||||||||| || |||| || || || ||||| ||| | Sbjct 57556 CTTCGAGATGCGCAACGCCAGTTACAAGAAGACCAATTCGGACAACGGCTTCGACGACCT 57615 Query 99740 ATGA 99743 ||| Sbjct 57616 GTGA 57619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423953034421994