Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq374 98.7 2e-15 seq1971 84.2 5e-11 >seq374 Length=102525 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| |||| || || | || ||||| | || Sbjct 664 AAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCGGACACCATTGAGAAC 723 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| || || || | || ||||| Sbjct 724 GTCAAGACTAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAACAGCGTCTCATCTTT 783 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | ||| | ||||||||||| | ||||| ||||| Sbjct 784 GCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAACATTCAGAAGGAGTCC 843 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 844 ACTCTCCACCTTGT 857 >seq1971 Length=9940 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | || || || | || ||| Sbjct 4830 CAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCCGAC 4889 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || ||| || Sbjct 4890 ACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAG 4949 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || |||||||| |||||| | || || || | ||| | |||| |||||| || Sbjct 4950 CGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 5009 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 5010 CAGAAGGAGTCCACTCTTCACCTCGT 5035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181664427750167