Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq5011 161 1e-34 seq1432 136 4e-27 seq250 136 4e-27 seq5385 91.5 1e-13 seq329 86.0 6e-12 >seq5011 Length=2423 Score = 161 bits (178), Expect = 1e-34 Identities = 381/569 (67%), Gaps = 36/569 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||| ||||| | || |||||| || | || ||||| Sbjct 923 TTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAA 864 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||||||| || || |||||| ||| || ||||||||||| |||||||| ||||||||| Sbjct 863 CTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATC 804 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | || || ||| | |||||||||||||||||| || | || ||| | Sbjct 803 GCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGAT 744 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| |||||| ||| ||| | Sbjct 743 CTCGGGCCGGTCTATGGCTATCAGTGGCGCTCCTGG-----CCT-----GCGCCCG---- 698 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGA--TCATTACTGACTTGAAGAAGT 142540 || | || | ||||||||||| || | || | | || | ||| | Sbjct 697 ------ACGGCCG-GCATATCGATCAGAT--TGCGAATCTCGTCAGTGCGATAAAGCAAA 647 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| |||| || |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 646 ATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTCGATGAAATGG 587 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || || || ||| ||||||| ||| |||| | ||| | | | || || | Sbjct 586 CGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGG--CCGACGGAAAG-CTTTCCT 530 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| || ||||| || || || || |||||||| |||||||| || || || | Sbjct 529 GCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCT 470 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTC 142776 | || || || || |||| || | ||| | | |||||| | | || || ||| Sbjct 469 ATGCCCTGCTGAC---CCTCA-TGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTC 414 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||||| | ||| || |||| |||| Sbjct 413 GTTCACACGCTGGGCGATGCGCATCTCTA 385 >seq1432 Length=12607 Score = 136 bits (150), Expect = 4e-27 Identities = 366/550 (67%), Gaps = 46/550 (8%) Strand=Plus/Plus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| | |||||| || ||| ||||| | | ||||| || || || |||| ||| Sbjct 8439 TCTTCGGGCGTCAGATCCGCTTCGATCTGTCGAAGGGCTTCCCCCTCATCACCACCAAGC 8498 Query 142301 AGCTGCATCTGAAGTCGATCATCGT-CGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 |||| | || || ||| ||| ||| ||||| |||||||| | || ||| | ||| Sbjct 8499 GCGTGCACTTCAAATCCATCG-CGTACGAGCTCCTCTGGTTCCTGCAGGGTGATTCCAAC 8557 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAAT--G 142417 || || || | ||| || |||| ||||||||| || ||||| |||| ||| | Sbjct 8558 GTCGGGTGGCTCCGCGAGAACGGGGTCACGATCTGGGACGAGTGGGCCGATG--AATCCG 8615 Query 142418 GCAACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTG 142477 || ||||||| || |||||||| ||||||| || ||| ||| | | | | | Sbjct 8616 GCGACCTCGGCCCGGTCTACGGGGTGCAGTGGCGTTCGTGGCCGACGCCGGACGGGG--G 8673 Query 142478 GAG-AT-GACG---TCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTT 142532 ||| || ||| || | |||| |||||| |||||||| || Sbjct 8674 GAGCATCGACCAGCTCTCCGACGT---GATCGAGCAGATCCGACGC-------------- 8716 Query 142533 GAAGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGA 142592 || || | || ||||| | |||||| | || |||||||| || || || Sbjct 8717 -------TCGCCCGACTCCCGTCGGCTCATCGTGTCTGCCTGGAACCCGGCCGACATCCC 8769 Query 142593 CGACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAG 142650 |||||||| || | || |||||| | ||||||| ||| |||||| | || | ||| Sbjct 8770 GGACATGGCGCTCGCGCCCTGTCACGCGCTGTTCCAGTTCTACGTCGCC--GACGGCAAG 8827 Query 142651 CGTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAAC 142710 | | || || |||||||||||||| || ||| ||||||||| || ||||||||| Sbjct 8828 C---TCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAAC 8884 Query 142711 ATTGCTTCGTACGCGCTTCTCACACAGCTCATTGCTC-GCGAATGCGGTCTGGAACTCGG 142769 || || || ||||| | || || | | || || | || || || || || | ||| Sbjct 8885 ATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTG-GGCCTCGAGCCCGG 8943 Query 142770 AGACTTCGTC 142779 |||||||||| Sbjct 8944 AGACTTCGTC 8953 >seq250 Length=59172 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 |||||||| ||||| |||| | ||||| || || || |||| ||||||||||| ||| Sbjct 46864 CAGATGCGCTTCAACCTGGGCGACGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 46805 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 |||||||||| || || ||||||||||| || ||||| || |||||| || || Sbjct 46804 CGGTCGATCATCCATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTC 46745 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 ||| || | || |||||||| || ||||| |||||||| ||| |||| || || Sbjct 46744 ACCGACAACCAGGTGCGCATCTGGGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCG 46685 Query 142432 GTCTACGGCAAGCAGTGG 142449 ||||||||||||| ||| Sbjct 46684 ATCTACGGCAAGCAATGG 46667 >seq5385 Length=1239 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 148837 TTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAG 148896 ||||||||||| || || ||||| |||| ||| | || ||||||||| Sbjct 416 TTCATCGAGCGCATCGAGCGCCTTGAGGAAGAAAAGACCACGCTTCAGGACGACATCAAG 475 Query 148897 GACGTCTACGGC-GATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCAT 148955 || || | ||| || ||||| || |||| ||||||||||||| | | | || | Sbjct 476 GAAGT-GATGGCGGAAGCCAAGGGCCGCGGCTACGACACCAAGATCATCCGCACGATCGT 534 Query 148956 CAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 | | | ||||||||||||| | | ||||||| |||||||||||| |||||||| ||| Sbjct 535 CCGCCTGCGCAAGAAGGATGCGAACGAGCGCAAGGAAGAGGAAGCGATCCTCGAGCTGTA 594 Query 149016 TCTCGCTGCTCTCGGCATGATC 149037 | || ||||||||| || Sbjct 595 CATGAACGCCCTCGGCATGGTC 616 >seq329 Length=161735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || || ||||||||| | ||||| || |||||||||| || || |||| || Sbjct 13174 ATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAA 13233 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || || ||| | || || || ||| |||||| | ||||| | | || || || || Sbjct 13234 AAACTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAAT 13293 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || || || | | |||| || |||||||||||||| |||||||||| || || Sbjct 13294 ATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGT 13353 Query 142420 AACCTCGGACCTGTCTACGG 142439 |||| || ||||| || || Sbjct 13354 GACCTGGGCCCTGTTTATGG 13373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500434591809520