Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq648 118 3e-22 seq401 114 3e-21 seq2429 109 1e-19 seq35 107 5e-19 seq841 91.5 4e-14 seq172 86.0 2e-12 >seq648 Length=65085 Score = 118 bits (130), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | |||||||||||||| ||||| || | | ||| | | ||| || Sbjct 40350 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 40294 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| ||||||||| |||||| ||| | |||| |||||||||||||| | | Sbjct 40293 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 40234 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||| ||||| | ||| ||||| || ||| ||||||||||| ||||| || ||| Sbjct 40233 GGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 40174 Query 397 CTCCCCTGTCTGCTTATCCTTCCA 420 || || || ||||| || |||| Sbjct 40173 CTGGCCGGTTTGCTTGTCGGTCCA 40150 >seq401 Length=77198 Score = 114 bits (126), Expect = 3e-21 Identities = 215/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 215 CGGCCATTCAT---GCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCC 271 |||||||||| | | || ||||| || || |||||||| | || || | | ||| Sbjct 66328 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCC 66387 Query 272 TGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAC 331 |||| ||| || | || | |||||| | | | || ||| ||||| ||||| ||| Sbjct 66388 ---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 66444 Query 332 TGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCT 391 | | |||||||| || | ||| ||||||| || ||||||||||| || || || Sbjct 66445 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 66504 Query 392 TTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCC 451 | || || || ||||||||||| |||||| |||| ||||| | | || | || Sbjct 66505 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 66564 Query 452 ACGCCGTTGCCGTTCGGCAGCGT-GCGGAATTCTGGATCGTTGCCTAAGTTGCCAATGAT 510 ||| ||||||||||||| | || ||||| ||| || ||| ||| |||||| | || Sbjct 66565 ACGGCGTTGCCGTTCGG-GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAG 66623 Query 511 TTCTACTTTGTT 522 |||||||| Sbjct 66624 AATCACTTTGTT 66635 >seq2429 Length=15282 Score = 109 bits (120), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 |||||||| || | ||||| ||| ||| | |||||||||||||||||| || |||||| Sbjct 13002 ACGATTTCCGTCGAATAGCGGTCATTGCCGGTCTGGTCCTGCCACTTGCGGGTCTGCAGC 13061 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 |||||||| | | ||||| |||| || |||||||| || | | ||||| Sbjct 13062 GCGCCTTCCAGATAAACCTTCATGCCCTTCTTGAGGTACTGTTCAGCCACCTTGGCCAGG 13121 Query 353 TT-TC--CGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 || || ||| ||||| |||| ||||||||| || ||||| || ||| || | | | Sbjct 13122 TTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGCTGTTC 13181 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAAT 438 || || |||| |||| || |||||||| Sbjct 13182 TTGTCGCGCCAGCTTTCCGAGGTGGCAAT 13210 >seq35 Length=166930 Score = 107 bits (118), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAG---CCTGGTCCTGCCACTTGCGCGTTTGC 289 |||||||| || |||||||||| |||| | ||| ||| ||||||||||| || | | Sbjct 115767 ACGATTTCGGTGCTGTAGCGATCGGCGCCGGTATCCTTGTCTTGCCACTTGCGGGTCTTC 115826 Query 290 AGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCC 349 || |||||| ||| | ||| || ||| || |||||| | || ||||||||| ||| Sbjct 115827 AGACGGCCTTCGATGTAGACCGAGCGGCCCTTCTTCAGGTATTCGCCGGCGATTTCGGCC 115886 Query 350 AGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 || | ||||| |||||||||||||| |||| ||| |||||| || | | Sbjct 115887 AGGCGGTTATACATGACGACGCGGTGCCATTCGGTTTCTTCGCGCTTCTCGCCGCTGGCC 115946 Query 410 TTATCCTTCCAGG 422 || |||||||||| Sbjct 115947 TTGTCCTTCCAGG 115959 >seq841 Length=45872 Score = 91.5 bits (100), Expect = 4e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 296 CCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTT 355 ||||| ||| | |||| ||| |||||||| || | || || | ||| || ||||| Sbjct 39656 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 39715 Query 356 CCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCC 415 ||||| | |||||||| |||||||| || | || | ||||||||||||| || || Sbjct 39716 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 39775 Query 416 TTCCAGGTTTCAGACGTGGC 435 ||||||||| |||||||| Sbjct 39776 CGCCAGGTTTCCGACGTGGC 39795 >seq172 Length=24343 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 |||||| | | | ||| |||||| ||||||||||| | || ||||||||| | ||||| Sbjct 1352 GCCTTCGACGTAGACCGAGCTGCCCTTGCGCAGGTATTCGCCGGCGATTTCACCGAGCTT 1411 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGT 384 ||||||| ||||||||||||||||| || Sbjct 1412 GCCGAAGAACACCACGCGGTGCCATTCGGT 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135384995278662