Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq44 208 7e-49 seq504 161 9e-35 seq19 100 3e-16 >seq44 Length=77107 Score = 208 bits (230), Expect = 7e-49 Identities = 1104/1723 (64%), Gaps = 69/1723 (4%) Strand=Plus/Minus Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 ||| || ||||||| |||| | | ||||| || | ||| | || ||||| ||||| Sbjct 10892 GTGCATTGAAGTCAACTTGGCAAAGTTTGGCTCGGCGATGAACACGTTGAACGACTGGCT 10833 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTT--TTGTCTTCATT 146751 || || || || || |||||||| ||||| || || | | || ||| | || Sbjct 10832 CTGGTCGATAAAGGCACCACGGTCGGCAGCCATGTCGATGAGG-GTACGTTGACGG-ATC 10775 Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTT-AACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 ||||| | || ||||| ||| |||| ||| | || ||||| || | ||||| || || Sbjct 10774 TCCCAGACAGTCTTGTAGAGCTCCTTTAACTCG-TCAGGAATGCCCTGGATGTTCTGGAT 10716 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAAGGTTTAGTTTAA 146869 || |||||||| || | || || ||| | || || || || | |||| || | | Sbjct 10715 GGAACCCTTGTGAGCGATGATC-TGGTTCTTCATCTCTGGTGTCCAGAGGTCAAGCTCCA 10657 Query 146870 TGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCAC---ACGTC 146926 ||||||| | | | | || ||||| || ||||| || || || || ||| | Sbjct 10656 TGAGGTCCTTGAGCAGCTGCTTGTTGACGACAGTGAACTCTCCGGCGAGGACGCGACGAC 10597 Query 146927 TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCG 146986 || || | ||||| ||| | || || || | ||| || || || | || || | | Sbjct 10596 TG---TAGATGTTGCTGGTGTACGGTTCGAACGCCTCGTTGTTTCCGAGGATCTGAGAGG 10540 Query 146987 TGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGT 147046 | | |||||||||||| || |||| ||| || || ||||| | || | Sbjct 10539 TCGAGGCGGTAGGCATGGGTGCAACCATCAAACTGTTGCGGAGACCAGTCTTGATAATTT 10480 Query 147047 TGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACT 147106 || ||||| | ||||||||| | ||||| ||||| ||||||||||| || Sbjct 10479 TGGTCTTCAGGGAGGACCAGTCCCAACGGGGGGAGGGGGTCACACCCCACATGTCGTGCT 10420 Query 147107 GGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG 147166 |||| || || || ||||| ||| ||| | ||| | | ||| |||||||||| | Sbjct 10419 GGAGGACACCACGGCTGGCAGGAGAGCCGGGGAAGGAGGAATAGTGGCCGTCGCGCTCGG 10360 Query 147167 CCAATTCA-CAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTT 147225 | | || ||| || ||| || |||| || || || ||||| | ||||| Sbjct 10359 CAAGCTCGGCAGAG-GCAGTGAGAGCAGAGAAGTAGATAGTCTCAGCGATCTCCTTGTTG 10301 Query 147226 AGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAA 147285 || || | || | | ||| |||||| ||||| | ||| | ||||| | | Sbjct 10300 AGAACAGCAGCACCAGCAGAGTCGAAAGGCAGACGCATGGCAATGAAGACGTCGGCAAGA 10241 Query 147286 CCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTT-GCTGCGCTTCGCGCTCGCTAT 147344 ||||||||||||| ||||| || || || ||| | | || | | || | | Sbjct 10240 CCCTGGATACCGATACCGATGGGACGGTGACGAAGGTTAGAGGTGCGTGCCTCTACCACT 10181 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404 ||| |||| |||||| || |||||||||||||| ||||| | | || || | Sbjct 10180 GGG-TAGTAGTTGCGGTCGATAATCTTGTTGAGATTACGAGTGATGATCTTGGTCAACTC 10122 Query 147405 TTTGAGTTTCTCGAAATCATAAGTCCC-GTCTTCGACACG-----TACGCA------TTG 147452 ||| || | ||| | || | | | | | || | | |||| ||| Sbjct 10121 AAAGAGGGCCTGGTGGTCAAAGGTGGCAGGCAT-GCCAGGGGTGGTGCGCACAAACTTTG 10063 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC 147512 | || ||||||||| || || ||||| ||||| || |||| | ||||||| || Sbjct 10062 G--CAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGTGTACTGAAC 10005 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 || |||| ||| ||||||||||| ||| ||| | || ||||| ||| || | Sbjct 10004 AATCTCGGTGCAAAGGTTGCTGCAAGAGATGGTTCCGAGGTTCTGCTGGTTGGACTTGCT 9945 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 ||||| ||||| ||| |||| ||||| || |||||||||| || | || | ||| Sbjct 9944 GTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGTGACTCGATGAT 9885 Query 147633 A---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGC--CGATAGCGGCCCTCGTTT--- 147684 | |||| || ||||| || || | ||| ||| || |||| || | Sbjct 9884 AGCGAACCAG---AGATCCTGAGCCTTTAC--GGTGCGACGAGAGAGGCCAG-GTGTCGC 9831 Query 147685 -TCGTACCGCTCGTACAAC-CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGAC 147742 || ||| ||| | | ||| || ||| || || |||| ||||| ||||| || Sbjct 9830 CTCATACTTGGTGTAGAGCTCGCGGAA-CTCATCTCCCCAGCACTCGGCGAGGCCAGGTG 9772 Query 147743 ACTGATGCGGACACATCAGCGACCACATGTC---GTCCGCGTTAACGCGTCGCATAAACA 147799 || || ||||| | || ||| || ||| || | | || || ||| |||| Sbjct 9771 CCTCATTGGGACAGA--AGAGACTCCA-GTCAGAGTTGGTCTCGACACGCTCCATGAACA 9715 Query 147800 GATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA-TCCTCGGCGCCCATG 147858 |||| | ||||| |||||||| | || ||||| || ||| ||||| ||| | Sbjct 9714 GATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGGGCAC-GCATCTCCTCCTTGCCGTGG 9656 Query 147859 TTGCGTTTCAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGC 147917 || | | || || ||| | | ||| |||||||||||| || || | ||||||||| Sbjct 9655 TT-CTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACGGC 9597 Query 147918 CAGCGCACCTTTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACAC 147974 | ||||| || ||||||||| ||||||||||| | ||| | ||| || || || Sbjct 9596 AAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAAGAC 9537 Query 147975 GCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCG 148034 ||| | ||| ||| | || ||| ||| ||||||||||| ||| | | || || Sbjct 9536 GCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCGGCT 9477 Query 148035 GGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA 148094 ||| || | | ||| | | | || | || ||| | ||||||| ||| ||||| Sbjct 9476 GGCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGCGCA 9417 Query 148095 ATCGCCCAA-TGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAAC 148153 | || || |||| |||||| |||||||||||||| | || | | | || | Sbjct 9416 CT-GCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTGGACGAGGAAGC 9358 Query 148154 ACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAA 148213 | || |||| || || | | || |||| ||| ||||| || | |||||||||| Sbjct 9357 AAGAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGTAA 9298 Query 148214 --ACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTG 148271 | | || || | | | | || || || | ||| | || ||||| |||||||| Sbjct 9297 AGAGACGCTTCGA--GAGCTGGTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTG 9240 Query 148272 AATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCG 148314 || || || | ||| ||||||||||| || || || || ||| Sbjct 9239 GATACCGAGAGAGACACGCATGAGCATCTGTTGGGGACGCTCG 9197 >seq504 Length=56252 Score = 161 bits (178), Expect = 9e-35 Identities = 241/338 (71%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 51546 CCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA-TG 51604 || ||||| ||||| ||||||| |||| | || || ||||||||||| |||| || Sbjct 35642 CCAATGATACCGCAAGCGAGACGAGCGCCGGCGTGACCGGTGGTCTTGCTGT-CGGACTG 35700 Query 51605 GTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACGCT 51664 | | ||| ||||| |||||| | ||||| || |||| |||||| | || Sbjct 35701 GCCTCCGAGACCGAGGTCGTCGGCGTCGGCGTGGACGACCATGGAGCGGCCGATGATAGA 35760 Query 51665 ATTTTCGCCGAAAAGCGTCATCACGTTGTC-GATCTTGTCCACTTCGGTGAGGGCGTTGG 51723 || ||||| || || || || | ||||| || | | ||||| |||| | Sbjct 35761 GTTCTCGCCAAAGAGGGTGATGAGCTTGTCAGAGAGCGAGC----CGGTGTCGGCGGCAG 35816 Query 51724 ACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGC 51783 | | | ||||||| ||||||||||| ||||||||||| | | ||| | || || | Sbjct 35817 AGCCGTGGGCCTCGAGGTTGCCCAAGTCTCCGACGTGGCGGACGTCGGCGGTGGGGGCTC 35876 Query 51784 CGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGT 51843 |||| || ||||| |||||||||||| |||| || ||| ||||||||||| |||||| Sbjct 35877 CGTGCTCCTTGCCGAAGGGGTTGAAGTGGGCGCCGGCGGACATGCAGCCGTTGGTGGTGT 35936 Query 51844 CGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCCCTC 51881 |||| || | ||| ||||||||||||||||| ||| || Sbjct 35937 CGCCAAACTGGTGGACGTGGAATCCGTGCAGTCCCTTC 35974 >seq19 Length=879724 Score = 100 bits (110), Expect = 3e-16 Identities = 299/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCC 46883 ||||| || ||||||| ||||| ||| |||||| | || || || || || Sbjct 583685 GCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGT 583744 Query 46884 GCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTG 46943 | || || | | |||| | |||| | ||||| || || || || ||||| |||||| Sbjct 583745 TCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGTTG 583804 Query 46944 ATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTG 47003 || || | || || || | || || ||||| || || ||| || | || | Sbjct 583805 ATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCTCAAA 583864 Query 47004 AATGAGAAATTAAACTCGGACA-CGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| ||| | | | ||| || || || | || | | || ||||| ||||| Sbjct 583865 AAT---AAACTGAGCCAGGAAGTCGTTCATG-GAATTATCCGCGACGCGGTAGAAATCGA 583920 Query 47063 AAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTAT 47122 |||||| ||| |||| | || |||| || ||| || | || ||||| ||| | || Sbjct 583921 AAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAACTGAT 583980 Query 47123 GTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAG---CTCGGACA-ACCG 47177 || | |||||||||||||| || || | | ||| ||||| || || | ||| Sbjct 583981 GTCACAGTATATTGAGTTTGTTGCAGA----CAGATGGCTGCAGGAACTGGGTTATACCA 584036 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 |||||| | | ||| ||||||||||| |||||| | | || || || | |||||| Sbjct 584037 AAATATATCA-TGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 584095 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 |||||||| || |||||||| || || || ||| Sbjct 584096 ACCAATTTCTTTGAGAAACGTGTGGGTGATTAT 584128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476549675451720