Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq36 136 1e-27 seq1661 122 3e-23 seq399 107 7e-19 >seq36 Length=362838 Score = 136 bits (150), Expect = 1e-27 Identities = 247/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 36787 CAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCC 36846 ||||| || || | || ||||| || |||||||||| || || |||| |||||| Sbjct 350017 CAGCGCCTGGTGCTGACGCGCCCGGCGGTCGAGGCCGGCGAACGCCTGGGCTTTCTGCCC 350076 Query 36847 GGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGAC 36906 |||| | | | ||||| | | || |||||| |||| || |||||| | |||| Sbjct 350077 GGCGACCTGGCGCAGAAGGTCGACCCCTACCTGCGCCCGCTGTACGACGCGCTCTACGAC 350136 Query 36907 CTGGTTGGCC-CGACGATGGCCAAGCGCCTGCAGGAGACCCG--CCAGCTCGAGATCGCC 36963 ||| | ||| ||| || || |||||||| || | | ||| ||||||||||| Sbjct 350137 CTGATGGGCTTCGA-GAAGGTGCAGCGCCTGTTCGAAAAGCAGACCA--TCGAGATCGCC 350193 Query 36964 CCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATG 37023 ||||||||||| ||||| ||||| ||| | ||| || | ||| ||||| |||||| | Sbjct 350194 CCGCTGGCCTATATGCGTGGCCGCACCCTGAACCACGCCTTCGTCATCCTGGACGAGGCG 350253 Query 37024 CAGAACGCCACCCCGCGACAGGCCGCGCTGCTGGTGACCCGCCTGGGCTTCGGAACGCGG 37083 |||||| |||| ||| |||| | || | |||||||| | || || || | | Sbjct 350254 CAGAACACCACGCCGGAACAGATGAAGATGTTCCTGACCCGCATCGGTTTTGGCAGCAAG 350313 Query 37084 GCCGTCTTGAACGGTGACCCGGCCCAGTGCGACCTCCCGGCGGGCAAGGGCAACGGC 37140 |||||| | | ||| |||||| | ||| ||||| ||| ||| ||| || |||| Sbjct 350314 GCCGTCATCACCGGCGACCCGTCGCAGGTGGACCTGCCGCGCGGCCAGGACAGCGGC 350370 >seq1661 Length=12788 Score = 122 bits (134), Expect = 3e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGAC 4576 ||||||||||| | |||| ||||||| || ||||| ||||| | |||| || Sbjct 8416 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 8357 Query 4577 CTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTG 4636 ||| || ||||| || || || | ||||||||||| | |||||||||||| | Sbjct 8356 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 8297 Query 4637 GCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGC 4696 |||| | || ||||||||| | || || | || |||||||| | ||| |||||||| Sbjct 8296 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 8237 Query 4697 CAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGG 4746 ||||| ||||||||||| ||| | || ||| | ||| |||||||| Sbjct 8236 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGG 8187 Score = 91.5 bits (100), Expect = 5e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4173 TTTTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTG 4232 |||| || || ||||| |||||||| || |||||||| || ||||||||| | |||||| Sbjct 8676 TTTTTCGGCTTTTCGGCTATGCCGGTACCGGCAAGACGACGCTGGCCCGCTATTTCGCTG 8617 Query 4233 AGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCT 4290 || | | ||||| |||| ||||||||| |||||||||||||| | ||||| Sbjct 8616 AGCATATTGACGGCGACGTGCAGTTCGCCGCTTTCACCGGCAAGGCCGCGCAGGTCCT 8559 >seq399 Length=120904 Score = 107 bits (118), Expect = 7e-19 Identities = 230/335 (69%), Gaps = 24/335 (7%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCAC--CACGGACTGCGCCTGCT 36770 |||||||||| || ||||| ||||||| ||||||| | | | ||| | ||| || Sbjct 49886 TCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGCGCGGTCGATGCC--CT 49943 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACT----CGCCCCGCCGTCGAGGCCGAGG 36826 |||| | || | | ||||| | || | || || || || || || |||| | Sbjct 49944 GGAGCGCGAGCAGGT---GCGACGCATCCTG-CTGGTGCGTCCGGCGGTGGAAGCCGGCG 49999 Query 36827 AGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGA 36886 ||||||| |||| ||||||||| | | | ||||||| | ||||||||| |||| Sbjct 50000 AGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGC 50059 Query 36887 TGCTGGACGCGGTGATCGACCTGGTTGGCC-CGACGA--TGGCCAAGCGCCTGCAGGAGA 36943 | |||||| | ||| || | ||| ||| | ||||||||| || ||| Sbjct 50060 TCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAAGC---TGATCGAG- 50115 Query 36944 CCCGCCAGCT---CGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACA 37000 |||||| | ||||||||||||||||||||||||||| ||||| || | ||| ||| Sbjct 50116 --CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCGTACGCTGAACAACA 50173 Query 37001 CGTTCCTCATCGCCGACGAGATGCAGAACGCCACC 37035 ||| |||| |||||| | |||||| ||||| Sbjct 50174 GCTTCATCATTCTCGACGAAAGCCAGAACACCACC 50208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180774628323426