Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_026608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq332 91.5 4e-14 seq3947 89.7 1e-13 >seq332 Length=28461 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 28028 CCTTGGCGTCAAGGGCTTCGCTTGGGACAAGACCAACGGCGGCAAGTCGCCGACCGACGC 28087 ||| ||| | ||||||| | | |||||| || |||||||||||||||||||||||||||| Sbjct 14865 CCTGGGCCTGAAGGGCTACACCTGGGACGAGGCCAACGGCGGCAAGTCGCCGACCGACGC 14924 Query 28088 GGCGGTTGCCACGGCGACCAATTGGGAC 28115 | | | ||||||| ||||| |||||| Sbjct 14925 CGAGCTGGCCACGGGCACCAACTGGGAC 14952 >seq3947 Length=3478 Score = 89.7 bits (98), Expect = 1e-13 Identities = 206/307 (67%), Gaps = 5/307 (2%) Strand=Plus/Minus Query 38810 CGGCGAATACTTCGATTGGTATTACTTGAACGCA-GCCGACCGGGCCGCGCAAATCCGCA 38868 ||||||| || || |||||||| | | || | || || || |||||| |||| Sbjct 1135 CGGCGAAGGTTTTGACTGGTATTA-TGCATCGGATGCGGATCGAACCGCGCGGCGGCGCA 1077 Query 38869 CGCCTATTACCGACGGTGCCTACGGTAAACCATGGGTATTCCGCAACAAAGACTTCCGTT 38928 |||| || |||||||| | || || | ||||| | |||| |||| ||| || Sbjct 1076 CGCCGATCACCGACGGATCG---GGCAAGGCGTGGGTCTACCGCTACAAGGACATCGAGG 1020 Query 38929 CTTGGTGGAATAACTACCATTACAACCGCCCCGGCTACGTCGAAGACGCTTCGCCGACGG 38988 | |||||||| ||| |||||||||||| ||| |||||| ||| | |||| Sbjct 1019 CCTGGTGGAAAAACCCGCATTACAACCGCAAGGGCGGCGTCGAGAGCGCCAATGCCACGG 960 Query 38989 GTTGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAATTCGGCTTTCCTGCGGTCGATA 39048 ||| |||| |||||||| ||| | || ||| | |||| ||| || ||||| | Sbjct 959 CGTGGCAGCCTATGGGTAAGCCGATCTGGCTGACGGAACTGGGCTGTCCGGCAGTCGACA 900 Query 39049 AAGGCACCAATCAACCAAACGTTTTCTACGACCCTAAGTCTTCCGAAAGCGCCTACCCCT 39108 | ||| ||||||| || || || || ||| | ||||| ||||| | || | || | Sbjct 899 AGGGCCCCAATCAGCCCAATGTCTTTCCCGATGCCAAGTCCTCCGAGGGGGCGTTTCCGT 840 Query 39109 ACTTTTC 39115 | ||||| Sbjct 839 ATTTTTC 833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134559496524570