Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_026611.1 Length=43129 Score E Sequences producing significant alignments: (Bits) Value seq846 302 1e-77 seq2747 93.3 1e-14 seq77 80.6 7e-11 >seq846 Length=12855 Score = 302 bits (334), Expect = 1e-77 Identities = 535/775 (69%), Gaps = 10/775 (1%) Strand=Plus/Plus Query 34570 AACATAAAACCCTCTACGTCCGAGAATTCTGACGAATCCTCAGACGGCTGTCGGAATGAG 34629 || |||||||| | | ||||||||||||||||||||||||| ||| | | | ||| | Sbjct 9266 AATATAAAACCTTTTTCGTCCGAGAATTCTGACGAATCCTCTGAC--CAGCCAGAAAACG 9323 Query 34630 AT--TCAGATCACTCGGCCAGATGCTGCAATTCAACGCGGAACCAAGTGGGGAACATCCG 34687 || || | | || |||||||||||||| |||| | ||||||||| ||| | | Sbjct 9324 ATCTTCCTGTGATGAAACCGGATGCTGCAATTCAGAGCGGCAGCAAGTGGGGGACAGCAG 9383 Query 34688 AAGACCTGCGTTGCGCTGAATGGCTGTTCTCAGTCGTGCAAAGCATCTCCTCAACCGCCA 34747 |||||||| ||| || ||| |||| | ||| | | |||| | || | |||| Sbjct 9384 AAGACCTGACCGCCGCAGAGTGGATGTTTGACATGGTGAAGACCATCGCGCCATCAGCCA 9443 Query 34748 AGAAGCCAAACTACGCATCATGGGCTAACGACATCCGCCTGATGCGAGAGAGCGACGGAC 34807 || || || | ||| ||||||||||| |||||||||||||| || | || |||| Sbjct 9444 GAAAACCGAATTTTGCAGGGTGGGCTAACGATATCCGCCTGATGCGTGAACGTGATGGAC 9503 Query 34808 GCACTCACAAGGAGATCGCCACGCTGTTCAAGTGGGCCTGCGATGACGACTTCTGGAAGG 34867 | | ||| || || | ||||||| ||||| ||| | ||| |||||||| | Sbjct 9504 GTAACCACCGCGACATGTGCGTGCTGTTCCGCTGGGCATGCCAGGACAACTTCTGGTCCG 9563 Query 34868 GGAATGTTCTTTGCCCAGCCACGCTGCGCAAGAAATGGACTCAGCTAGATATCAAGCGCC 34927 | || || || | || || | || ||| | || ||||| ||||| || ||||| || Sbjct 9564 GTAACGTGCTGAGTCCGGCTAAACTCCGCGACAAGTGGACCCAGCTCGAAATCAACCGTA 9623 Query 34928 AAAA---ACTGGCATCAGGTAAACCCGCTGAAAGGCCAAAGGTCGACCTGACTAACACTG 34984 | || || ||| | | | || |||| ||||| |||||||||| ||||||| Sbjct 9624 ACAAGCAACAGGCTGGCGTGACAGCCA--GAAAA-CCAAAACTCGACCTGACAAACACTG 9680 Query 34985 ACTGGATTTACGGAGTTCAGCTATGAGGAGCGTTTCAGAGCAGATACAAAAATTCAGCCG 35044 ||||||||||||| || | ||||| | | | | | ||||| || || ||| Sbjct 9681 ACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACTTTGACCG 9740 Query 35045 GGGGCAGATTCAGCGTGTGGCCAGCAACCTACCTGAGCAGCGCTGTGAAGCGCAGCAGGT 35104 | |||||| | || | |||| |||| | || || ||| | ||| || |||||| Sbjct 9741 TGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGCCGCAGGT 9800 Query 35105 TGAGCAAGTAGCCCATGTTATCAATGGGGTATTTACCCAGCTTCTCGCGGTATTCCCTGC 35164 | || ||||| || | ||||| || || || | |||| | || || ||||| || Sbjct 9801 ACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTTTCCCGGC 9860 Query 35165 CAGCCTGGCCAACCGTGACCAGCGCGAGATAAACGAAATACGGCGTCAGTGGGTGATGGC 35224 |||||||| |||||||||||| || | |||||||| || || |||||||| |||| Sbjct 9861 GAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGTGGGTTCTGGC 9920 Query 35225 GTTCCGGGAAAACGGGATTACCAGCCTTGACCAGGTTTCTGCTGGTATGCGAATCGCACG 35284 ||||||||||||||||| |||| | || |||||| || || ||||| | || || Sbjct 9921 TTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGCGCGTAGCCCG 9980 Query 35285 AAAGCAAGAGCGGCCATTCCTCCCATCGCCCGGCCAGTTCATAGCATGGTGCCGG 35339 ||| | || |||||||| ||||| ||||| ||||| | || ||||||||| Sbjct 9981 TCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGTGCCGG 10035 >seq2747 Length=1393 Score = 93.3 bits (102), Expect = 1e-14 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 22252 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATT 22302 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATT 71 >seq77 Length=324652 Score = 80.6 bits (88), Expect = 7e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 22252 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA 22300 ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 157755 CGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTGCCGGCACCA 157803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137874289971234