Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq374 131 2e-25 seq1971 127 2e-24 seq44 111 2e-19 seq1210 98.7 1e-15 seq1077 84.2 2e-11 >seq374 Length=102525 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || ||||| || ||||| ||||| ||||||||||| ||| | Sbjct 875 CCTCCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAA 816 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| ||||| || | |||||| |||||||| || Sbjct 815 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGA 756 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| || | ||||| || || || Sbjct 755 ATGCCCTCCTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACC 696 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || | || || |||||||||||||| Sbjct 695 TCCAGAGTGATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || ||||| ||||| || |||||||| || | Sbjct 647 CCTCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 588 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| ||||| || | |||||| || ||||| || Sbjct 587 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGA 528 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || ||| ||||| || | || ||||| || || Sbjct 527 ATACCCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACC 468 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| || || || | ||| || |||||||||||||| Sbjct 467 TCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 >seq1971 Length=9940 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | |||||||| || ||||| ||||| || |||||||||||| Sbjct 5056 TTGCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCG 4997 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || ||| | ||| |||||||| ||||| || ||||| | |||||| || ||||| Sbjct 4996 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGG 4937 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || || || || ||||| || | |||||||| || Sbjct 4936 GGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCA 4877 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| ||||| || || || || || || |||||||| ||||| Sbjct 4876 ACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || ||||| ||||| || |||||||||||| Sbjct 4597 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4538 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||| ||||| || | ||||||||| ||||| || Sbjct 4537 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 4478 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| || || || Sbjct 4477 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACC 4418 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 4417 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||||| || || || || ||||| || ||||||||||| Sbjct 4825 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4766 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || ||||| | |||||| || ||||| || Sbjct 4765 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGA 4706 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | |||||||| ||| || Sbjct 4705 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACC 4646 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || || || || ||||| |||||||| Sbjct 4645 TCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||||| || || || || ||||| || |||||||||||| Sbjct 4141 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4082 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || || ||||| | |||||| || ||||| || Sbjct 4081 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4022 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | || ||||| ||||| Sbjct 4021 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACC 3962 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || |||||||||||||| Sbjct 3961 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 >seq44 Length=77107 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 ||| || ||||| | || | ||| ||||||| || ||||| || ||||| |||||||| Sbjct 9881 CGCTATCATCGAGTCACAGATCGAGACCGGTACCCCCTACATCCTCTACAAGGACGCTTG 9940 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| ||| ||| || ||| | || ||||| | ||||||||| || ||| | || Sbjct 9941 CAACAGCAAGTCCAACCAGCAGAACCTCGGAACCATCTCTTGCAGCAACCTTTGCACCGA 10000 Query 8352 AATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 ||||| ||||||| | | ||||| ||||| ||||| ||||| || || || Sbjct 10001 GATTGTTCAGTACACCTCTCCCGATGAAGTCGCCGTGTGCAACCTCGCCTC 10051 >seq1210 Length=15033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||| || ||||||||||| | Sbjct 12693 CCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 12752 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || |||| |||||| || ||||| || Sbjct 12753 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGG 12812 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| || | ||||| || || || Sbjct 12813 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACC 12872 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||| || || || |||||||| Sbjct 12873 TCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq1077 Length=16265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || ||||||||||| || |||| | Sbjct 5436 AGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 5377 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | ||||| || ||||| || || || || Sbjct 5376 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCC 5317 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | |||||||| || || ||||| || Sbjct 5316 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAGCCCTCAACCTCGAGGGTG 5257 Query 134676 ATGGTTTTACC 134686 ||||| ||||| Sbjct 5256 ATGGTCTTACC 5246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505333159384040