Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq769 111 2e-19 seq5011 93.3 5e-14 seq120 84.2 3e-11 >seq769 Length=5203 Score = 111 bits (122), Expect = 2e-19 Identities = 304/459 (66%), Gaps = 45/459 (10%) Strand=Plus/Plus Query 90710 AAGCCGGTAGGCATTGTCGATCCCTTCCTGAAGGGTCCGGTCTTCCCCGGTCAACGGTTT 90769 || ||||| ||||| || || || |||||| | || || || | | || |||| || Sbjct 3477 AATCCGGTCGGCATCGTGGACCCATTCCTGGAAGGCCCCGTATCGACGGGCGAACGATTC 3536 Query 90770 TGGCTGGTGGTCTATCCGCGACAGATTACGTCGCTTCGCCATGTGTGGGAGCATCCC-GC 90828 ||||| ||||| |||||||| |||||||| ||||| || || || |||||||||||| || Sbjct 3537 TGGCTCGTGGTGTATCCGCGCCAGATTACCTCGCTGCGTCACGTCTGGGAGCATCCCAGC 3596 Query 90829 ATTCCCGCCCGCCGTCGAACCGTCTTTTGAATCGGCGTCTCCGGAACCGGAGAGTAAGCC 90888 |||| || | || ||| | | | || | ||||| ||| Sbjct 3597 TTTCCGGCATCCGGTGAAACAGGCGCT-GATGCTGCGTCG-----------------GCC 3638 Query 90889 CGAAGAAGTCATCGACGTCATCGCCCAATCCCGCAAATGGATTGAAGATTGG-GCGATCA 90947 || | |||| |||| || || ||||| ||| ||| ||| | Sbjct 3639 ---AGCATGCATC--CGTCTG-----AA------AAGTGGATCCGAGACTGGTGCGCA-A 3681 Query 90948 GTATTCCGCTTGATTACGATGTTGTCATGGAAGGTGCCCGCGACATGGTT-AATTCCAGA 91006 || |||||||| ||| | | |||||||| || || |||||| || || ||| Sbjct 3682 CCATCCCGCTTGACTACAACATCGTCATGGACGGCGCGCGCGACTACGTCGAAAGCCAAG 3741 Query 91007 CGTCGTGGCAGTTGGGGTGAATATCTCTGCTTTGGCGGCTTGCTTGAAGGTGAGTATGTT 91066 | || ||| | ||||||||||| || ||||| |||||| ||||||| ||||| || Sbjct 3742 AG-CGCGGCGGATGGGGTGAATACCTGTGCTTCGGCGGCCTGCTTGAGGGTGAAAGCGTA 3800 Query 91067 CC---TGCCGAATTTTGGAATCATTACGAAGTCGTGACAGGCGAAACCGTCGCCGAAGAA 91123 || |||| || ||| || ||||||| ||||| ||| |||| ||| ||||| Sbjct 3801 CCCAATGCC---TTCTGGCCACACTACGAAGCAGTGACCGGCAAAACGGTCCAGGAAGAC 3857 Query 91124 CACCGCGAATCGTTCTTTACGTGCTCTTGCTAAACAGGA 91162 ||||||| |||||||| || ||||| |||| | || || Sbjct 3858 CACCGCGGCTCGTTCTTCACTTGCTCCTGCTGATCATGA 3896 >seq5011 Length=2423 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177003 AGTTTCTTGGTGGTCACGGCAGGAAAGCCCTTGGACAGGTCGAAACGTATCTGGCGACCA 177062 ||||||||||| |||| ||||||||| ||| ||||| ||||| || |||||| || Sbjct 862 AGTTTCTTGGTCGTCAGGGCAGGAAAACCCGCCGACAGATCGAATCGCATCTGGTAGCCG 921 Query 177063 AATACGGACCTTGTGCCAGTTCCGGTACGATCATCGGCATCGACGCCGTTTTCCAGCAC 177121 || ||||| | |||||| || |||||||| || || ||||||||| | || ||||| Sbjct 922 AAAACGGAACGTGTGCCTGTCCCGGTACGGTCGCCGCGGTCGACGCCGGTATCGAGCAC 980 >seq120 Length=487886 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 95631 TGCGGGGTAGTAGCAGTGGTTAGCTCGTCTGCCTCATAAGCAGAAGGTCATCAGTTCGAA 95690 |||||||| | |||||| | ||||||||| | ||||||| | ||||||||||||||||| Sbjct 383541 TGCGGGGTGG-AGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCATCAGTTCGAG 383599 Query 95691 TCTGATCCCCGCAACC 95706 |||| ||||||| ||| Sbjct 383600 TCTGGTCCCCGCTACC 383615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622834789434120