Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 269 4e-67 seq1288 95.1 2e-14 >seq19 Length=879724 Score = 269 bits (298), Expect = 4e-67 Identities = 591/877 (67%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 39324 TTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 39383 ||||||| || ||||| || |||||||| || ||||| |||||||||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 39384 TTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAA 39443 | ||||| |||||||||||||| || |||| |||| |||| || | || | ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 39444 TCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA 39503 | |||| ||||||||||| || || || | ||||| || |||||| || || | Sbjct 584015 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 583956 Query 39504 GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTA 39563 | ||| || | || || || | ||| || |||||||| ||||| || || || | Sbjct 583955 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 583896 Query 39564 -TCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || ||| || || || | ||| || || | |||| | | | |||||| Sbjct 583895 TTCCATG-AACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCA 583837 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||| | ||||||||||| ||| || || ||| ||| || || || ||| Sbjct 583836 AATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGC 583777 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG-AAAAGAAGATGCC 39741 || || || | ||||| | ||| || || | | || ||| ||| | ||||| ||||| Sbjct 583776 ATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAATGCC 583718 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTT 39801 ||| ||||| || || || || | | || | || || | | | ||||| Sbjct 583717 TTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCG 583661 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||| || ||||| |||||||||||||| | || |||| |||| || || Sbjct 583660 CAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCT 583601 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||||| ||| |||||||| ||| ||||| || | ||| ||| |||| || || Sbjct 583600 GTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTG 583541 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||||||| ||| ||||| || || |||||||| | ||||| | || ||||| || Sbjct 583540 GATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC 583481 Query 39982 TGAACA-AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | || || | | || | |||||||| || || || ||||| || |||||||| | Sbjct 583480 -GCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 583422 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 | | || ||| ||| |||| || | | | || || | ||||| || | Sbjct 583421 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 583362 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | | || | || | ||||||||| ||||| || || || ||| || ||||| | Sbjct 583361 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 583302 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| || ||| | |||| || || |||| |||||| Sbjct 583301 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Score = 269 bits (298), Expect = 4e-67 Identities = 799/1225 (65%), Gaps = 28/1225 (2%) Strand=Plus/Minus Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| || ||||||| ||||| ||||| | ||||| | | || ||| || ||| || Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 585860 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||| || | | || ||||| ||||||||||||||||| || || | ||| | ||| Sbjct 585859 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 585800 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 || || | | | || ||| ||| |||||| | |||||||||||| ||| |||||| Sbjct 585799 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 585740 Query 69187 TTATTAAGATTTCGGA----CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA 69242 ||||| || || || || || ||| | || | || ||| || |||||| Sbjct 585739 TTATTCAGGTTCAGGGTAGCCTGATAGGTTA----CATCATATAATTTCTGATGATCAAA 585684 Query 69243 TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTC 69302 ||| | || ||||| | || || | || || || ||||| || || ||||| Sbjct 585683 CTCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTC 585624 Query 69303 AT---TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCC 69359 | | ||| | ||| | ||| || |||||||| || || || |||||| || || Sbjct 585623 GTCTTTGGAAGT---ATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCC 585567 Query 69360 CAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACC 69419 | ||||||||| || || |||| || || || || | | | | || || || Sbjct 585566 TAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCC 585507 Query 69420 AGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT 69479 ||||||||||| || || | ||| | ||||| | || || || ||| || Sbjct 585506 GGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAAT---GGTTTT 585450 Query 69480 ---GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAAC 69536 | ||| |||||||| || | ||||| |||||||| | || | Sbjct 585449 ACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCA 585390 Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596 ||| ||| ||| || ||||| ||||| | || ||| | | | || | || Sbjct 585389 ATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTAC 585330 Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTT 69655 | | |||| || || || | |||||| || ||| || | |||||||| | | || Sbjct 585329 CCTTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTT 585271 Query 69656 CTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATCAGAATGCCATG 69712 |||| || || || |||||| || || ||||| || | ||| | |||||||| Sbjct 585270 CTTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATG 585214 Query 69713 GTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGG 69772 | || || || || || | | || |||||| ||| ||||| || | || | || Sbjct 585213 GCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGG 585154 Query 69773 CAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAG 69832 | || | ||| | ||| ||| ||| || | ||| ||||| | || ||||||||| Sbjct 585153 CGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCAC 585094 Query 69833 AAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 ||||||| ||| | || || || ||| || || ||| || || ||||| ||| Sbjct 585093 CAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTT 585034 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 || ||| ||| |||| || || || || || || || || || || || || Sbjct 585033 GTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCA 584974 Query 69953 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAG 70012 || | || | ||| ||| |||||||||| | | || | ||||||||||| || | Sbjct 584973 TGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTG 584914 Query 70013 GAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 | | ||| || || ||||| ||| | ||| || || ||| |||| || ||| | Sbjct 584913 GGGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAA 584854 Query 70073 TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCG 70132 |||| | ||||| |||| || |||||||| |||| ||| || || |||||||| Sbjct 584853 TATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAA 584794 Query 70133 TTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGT 70192 ||| | |||||||| ||| || |||||||| || ||||||||||||||||| | | Sbjct 584793 TTTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGA 584734 Query 70193 ATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||| || || || |||||||| Sbjct 584733 ATCCAAAATCCCTGTCATAAATAAT 584709 >seq1288 Length=22276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| || || |||||||| || | || || | ||||| || || ||||| Sbjct 673 CAGGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGTGAGG 614 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAA 39735 || |||| || || ||||| |||||||| || || | |||| || || || || ||||| Sbjct 613 CCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGAGCCCGAGAAGAA 555 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTAT 39795 |||||| || || || ||||| || || || | ||| | | || || | || Sbjct 554 GATGCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCAAAGCTGCGCGAGTTTTCGAT 495 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| ||||| || || ||||| || || || || || || || || || Sbjct 494 CCAGCGGATCGCCCACTCGGCCTTCTTGCGCACGGCGGGGATCGTCTCGATGGCGTTGAA 435 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 ||| | || | | || || | || || || || | |||||| ||| | || Sbjct 434 GAGCTGGGCCTTGCGCGCGGTGTCCTTGATGTAGGTGTCGATCAGCAGACTGTACGTCTC 375 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 || ||||||||||| || || || || || ||||| || || | || || | ||||| Sbjct 374 GGAGTGGATGTTTTCGATGGCGATTTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGATTTG 315 Query 39976 TACCTCTGA 39984 ||||| || Sbjct 314 CACCTCGGA 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686820128660280