Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq3870 93.3 5e-14 seq56 86.0 7e-12 >seq3870 Length=345 Score = 93.3 bits (102), Expect = 5e-14 Identities = 201/297 (68%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 41513 GATGTCAGGATACATTCTTTTACTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41572 ||| || |||||||| | || ||||| ||||| || || ||||| || || || ||||| Sbjct 302 GATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTT 243 Query 41573 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGTTTAGGGAAAA 41631 ||||||| |||| | | | || | ||| || || || | | || ||||| ||||| | Sbjct 242 CGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACA 184 Query 41632 TAGGAGTTATCCCGTCACGACCAAGGCCTTTAATACGATTTTTCAGAATTGCTTTCTGAA 41691 | |||| | | || ||| |||||| ||||| || ||| || | || ||||| Sbjct 183 CCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGAA 124 Query 41692 TCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTT 41748 ||| || ||| |||| || ||| |||||| || |||||||| ||||| | Sbjct 123 TCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCT 67 Query 41749 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 41805 | ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 66 GACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 >seq56 Length=468132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 69118 TTGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACC 69177 ||||||| | | | ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 224495 TTGGTGCCGGTGAAAGGAATCGAACCCTCGACCTTCTCATTACAAGTGAGCTGCTCTACC 224436 Query 69178 TACTGAGCTA 69187 ||||||||| Sbjct 224435 AACTGAGCTA 224426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534129441664040