Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq4950 185 2e-42 seq846 109 1e-19 seq2798 80.6 7e-11 >seq4950 Length=777 Score = 185 bits (204), Expect = 2e-42 Identities = 203/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Minus Query 36748 ATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 36807 |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 344 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 285 Query 36808 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 36864 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 284 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 225 Query 36865 GCCACA------------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGAT 36906 |||| | | |||| |||||||||||| ||| || |||||| Sbjct 224 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 165 Query 36907 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 36965 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 164 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 106 Query 36966 AAGCCTCCGTGCTGATGTTTCTGCTGGGCGT 36996 || |||| || |||| | ||||| ||| Sbjct 105 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 75 >seq846 Length=12855 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 20078 AATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 20137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1560 Query 20138 TAC 20140 ||| Sbjct 1561 TAC 1563 >seq2798 Length=1848 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 17787 ACTCCACCTTTTCATCAATCCAGTCCGCCAACCACTGCATCATTTCTCTGCGCTTAACG 17845 ||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||| || Sbjct 1430 ACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 1488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123837611544096