Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq1432 105 1e-17 seq878 93.3 6e-14 seq5011 84.2 3e-11 seq250 84.2 3e-11 >seq1432 Length=12607 Score = 105 bits (116), Expect = 1e-17 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || |||||||| ||||| ||||| || || | |||||||| ||||||||||||||| Sbjct 8828 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 8887 Query 198389 GCGTCTTACGCATTACTCGTGCA-CATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGA 198447 || || ||||| || || | || ||| | ||||||||||| | | | ||| || || Sbjct 8888 GCCTCCTACGCCTTGCT-GACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGA 8946 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 ||| | ||||||||||| ||| || ||||| ||||| | || |||| | Sbjct 8947 CTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGGGA 9006 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATC 198567 ||||| | |||||||| | || | |||| ||| || ||| || || ||||| Sbjct 9007 GCAGCTCAGCCGTGAGCCCTACCCCTACCCGACGCTGCGTTTCGCGCGGAAGCCCGAATC 9066 Query 198568 TATCTTCGATTA 198579 || |||| || Sbjct 9067 GATTCTCGACTA 9078 >seq878 Length=51136 Score = 93.3 bits (102), Expect = 6e-14 Identities = 177/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 198350 CGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCTTACGCATTACTCGTG 198409 ||||| | ||| | ||||||||| |||||| ||||| ||| | || || ||| Sbjct 39116 CGCAGCTCAGATGTATTCCTCGGCCTGCCGTACAACACCGCTGCCCTGGCGTTGCTCACC 39057 Query 198410 CACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATTTGGACGGGCGGTGAC 198469 || ||| | ||||||||| || || | || ||| |||| || || ||| Sbjct 39056 CATATGCTGGCCCAGCAGTGCGACCTGATCCCTCACGAGATCATCGTCACCACGGGCGAC 38997 Query 198470 ACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTGACGCGTGAGCCGTTA 198529 || || |||| || || |||| ||| | || ||||||| |||| |||| Sbjct 38996 ACCCACGCCTACAGCAACCACATGGAACAGATCCAGACCCAGCTGGCGCGCACGCCGAAG 38937 Query 198530 CCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTCGATTATAAATTCGAA 198589 | ||| ||||| | |||||||| ||||| | || |||| |||||| ||||||||| Sbjct 38936 AAGCTGCCGGAACTGGTGATCAAGCGCAAACCCGCGTCGATCTACGATTACAAATTCGAA 38877 Query 198590 GATTTTGAGATCGTTGGGTAT 198610 |||||||| ||||| || ||| Sbjct 38876 GATTTTGAAATCGTGGGCTAT 38856 >seq5011 Length=2423 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| ||||| || ||||| || | ||| || || || ||||||||| || ||| || Sbjct 956 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 897 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||||| || | ||||| |||||||| || || || || ||||| || Sbjct 896 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAG 837 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || || |||| | ||||| | || |||||||| || Sbjct 836 CTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACG 777 Query 197846 ATTTGG 197851 || ||| Sbjct 776 ATCTGG 771 >seq250 Length=59172 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 197708 CAGATGCGTTTTGATTTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTG 197767 |||||||| || | || | | || |||||| | ||||| || ||||| || |||||| Sbjct 46864 CAGATGCGCTTCAACCTGGGCGACGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 46805 Query 197768 CGTTCTATTATCCATGAACTGCTGTGGTTCCTTAGTGGGGATACCAACA 197816 || || || |||||||| |||||||||||||| | || || ||||||| Sbjct 46804 CGGTCGATCATCCATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACA 46756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769094306721160