Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1971 111 1e-19 seq1210 98.7 8e-16 seq374 96.9 3e-15 seq426 89.7 4e-13 seq504 84.2 2e-11 >seq1971 Length=9940 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | |||| | || |||||||| || ||| Sbjct 4795 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 4736 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||||||||| || || || | ||||| || || ||||||| | || Sbjct 4735 GCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTG 4676 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | |||| || || || || || | ||||| |||| || Sbjct 4675 ACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTC 4616 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || |||||||||||| || Sbjct 4615 TTGACGAAGATTTGCATACCT 4595 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| |||| |||||||| || ||| Sbjct 5023 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 4964 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||||||||| || || || | ||||| || || ||||||| | || Sbjct 4963 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 4904 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | | ||||| || ||||| || | ||||| |||| || Sbjct 4903 ACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTC 4844 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || || || |||||| || Sbjct 4843 TTGACGAAAATCTGCATACCT 4823 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| || | |||| |||| || ||||| || || Sbjct 4111 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 4052 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||||||||| || || || | ||||| || || ||||||| | || Sbjct 4051 GCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 3992 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || || || || | ||||| ||||| || Sbjct 3991 ACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 3932 Query 27231 TTCACAAAGATTTGCATAG 27249 || || || |||||||||| Sbjct 3931 TTGACGAAAATTTGCATAG 3913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| || || || || ||| Sbjct 4567 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 4508 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || || || || | ||||| || || ||||||| | || Sbjct 4507 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTG 4448 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | | ||||| || || || || | ||||| ||||| || Sbjct 4447 ACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 4388 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 4387 TTGACGAAGATCTGCATACCT 4367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || || || || ||||| || Sbjct 4369 CCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 4310 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 4309 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4250 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| | || | | | || | ||||| | | | || || Sbjct 4249 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACC 4190 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | ||||| || || || || || ||||| |||||| || Sbjct 4189 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCT 4139 >seq1210 Length=15033 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | |||| |||| ||| Sbjct 12711 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 12770 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || ||||||||||| || || || | ||||| || || | Sbjct 12771 AGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 12830 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | ||||| || || || || | ||| Sbjct 12831 ATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCTTG 12890 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || |||||||||||||| Sbjct 12891 CCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq374 Length=102525 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||| ||| | |||| |||| |||||||| || ||| Sbjct 845 GTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 786 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||||||||| || || | ||||| || || ||||| | || Sbjct 785 GCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGAATCTTAGTCTTG 726 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | | ||||| || ||||| |||| || || || || || Sbjct 725 ACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTC 666 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || || ||||||||| || Sbjct 665 TTTACGAAAATTTGCATACCT 645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||| || | | |||| |||| || || || || || Sbjct 389 GTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCA 330 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| |||||||| || || || || | ||||| || || |||||| | || Sbjct 329 GCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTAGTCTTT 270 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | |||| ||||| ||||| || | ||||| || || || Sbjct 269 ACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 210 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 209 TTGACAAAGATTTGCAT 193 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| |||| |||||||| || ||||| | |||||||||||||| || || || | || Sbjct 583 TGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATAC 524 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 |||| || || |||||| | || | | | || | || || | | | ||||| || | Sbjct 523 CCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCA 464 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||| || | ||||| || ||||| || || || ||||||||| || Sbjct 463 AAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCATACCT 417 >seq426 Length=101737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||| || | | |||| | || ||||| || || || Sbjct 90 GTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGCTTGCCA 149 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| |||||||| || || || || | |||||| || || ||||| | || Sbjct 150 GCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTAGTCTTG 209 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||| || | | ||||| || || || || | ||||| || ||||| Sbjct 210 ACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTC 269 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 270 TTTACAAAGATTTGCAT 286 >seq504 Length=56252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 96894 CACGGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAA 96953 ||||| || || || ||| ||||||||||||| | ||||||||||| || ||||||| Sbjct 35964 CACGGATTCCACGTCCACCAGTTTGGCGACACCACCAACGGCTGCATGTCCGCCGGCGCC 35905 Query 96954 CATTTCAA-CCCTACATTGCAA-AATCACGGCGCACCCAGCGCCATTGAACGCCACGTTG 97011 || ||||| |||| | |||| | ||||| || |||| |||| | |||||||| | Sbjct 35904 CACTTCAACCCCTTC--GGCAAGGAGCACGGAGCCCCCACCGCCGACGTCCGCCACGTCG 35847 Query 97012 GTGATCTGGGCAAC 97025 | || |||||||| Sbjct 35846 GAGACTTGGGCAAC 35833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424880917623624