Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq3870 82.4 8e-11 >seq3870 Length=345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 198/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 41613 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTC 41672 ||||| |||||||| | |||||||||||||| || || ||||| || || || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 41673 GGATCGTCTTTGTAAAGATTAACGCCTTCTTCGACGAACATA-ACAAGCTTAGGAAAAAT 41731 |||||| |||| | | | || | || || ||| || | || || || || || | Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATC-GCGAATCGCAAACACCAGTTTCGGGAACAC 183 Query 41732 AGGAGTTATCCCGTCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41791 | |||| | | || |||||| ||| ||||| || ||| || | || |||||| Sbjct 182 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGAAT 123 Query 41792 CATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 41848 || || ||| |||| || || |||||| || |||||||| || || || Sbjct 122 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 66 Query 41849 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 41904 ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 65 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535594852473400