Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq351 134 1e-26 seq34 123 2e-23 seq440 111 1e-19 >seq351 Length=183164 Score = 134 bits (148), Expect = 1e-26 Identities = 176/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 ||| || || ||||| ||||| ||||||||||| || ||||| || || || ||||| Sbjct 162882 CGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCCACTCCGCTGAGCGTGCTTGAGTACGT 162941 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||||||| | || || | |||||||| ||| ||||| ||||||||||| ||| Sbjct 162942 GATGGACAAAGTCGACATGGTGTTGCTGATGAGCGTCAACCCGGGCTTCGGCGGGCAGAA 163001 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGC-GTCGCCGCATTGATGCGTCCG 58280 || || || || || | || ||||| |||| || | ||| | || |||||||| | Sbjct 163002 GTTCATCCCCGGCACCCTTAACAAGCTGCGTGAAGCGCGGGCGCTG-ATCGATGCGTCGG 163060 Query 58281 GTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCG 58340 | || || |||||||| | ||||| ||||| || || ||||| ||| |||| |||| Sbjct 163061 GCCGTGATATCCGCCTGGAGATCGACGGTGGCGTCAACGTCAACAACATCCGCGAAATCG 163120 Query 58341 C 58341 | Sbjct 163121 C 163121 >seq34 Length=101160 Score = 123 bits (136), Expect = 2e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATC-TCGATTACGT 58161 ||||| || |||| ||||| ||||||| | || ||| | | ||| | || | || Sbjct 44632 GGCTGCAAGCCGGGCCTGGTGCTCAACCCCGGCACCCCGGTG-GACATCCTGGACTGGGT 44690 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 ||||| | ||||| || | ||||||||||| || ||||| ||||||||||||||| | Sbjct 44691 GCTGGACGACCTGGACCTGGTGCTGCTGATGTCGGTCAACCCGGGCTTCGGCGGCCAGGC 44750 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGG 58281 || |||||| | ||||||| || ||||||| || || | || ||||| ||| Sbjct 44751 GTTCATTCCGTCGGCGCTGGACAAGCTGCGCGTGGTCCGCCAGAAGATCGATGCCAGCGG 44810 Query 58282 TTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGC 58341 |||||| |||||||| | ||||| || ||||||| |||| ||||| | |||||| Sbjct 44811 CCGCGACATCCGCCTGGAGATCGACGGTGGGGTGAAGGCCGACAACATCGGGGCGATCGC 44870 >seq440 Length=46462 Score = 111 bits (122), Expect = 1e-19 Identities = 175/250 (70%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 58102 CGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGT 58161 |||||| || || || ||||| ||||||||||| |||||||| ||| | || ||||| Sbjct 29578 CGGCTGCAAGGCCGGCCTGGTGTTCAACCCGGCCACGCCGCTGTCCTATATGGACTACGT 29637 Query 58162 CATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTC 58221 |||||||| | || || | ||| | ||||| || ||||| ||||| ||||||||| Sbjct 29638 GATGGACAAGATCGACCTGGTGCTGATCATGTCGGTCAACCCCGGCTTTGGCGGCCAGAG 29697 Query 58222 TTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCG--------TCGCCGCATTGAT 58273 || ||||| |||||| || |||||||| | || ||| ||| | ||| Sbjct 29698 CTTCATTCCCGCCACGCTGACCAAGCTGCGCGAGGCCCGCGCCAGGATCGACGCCTGGAT 29757 Query 58274 GC-GTC---CGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATAT 58329 || | | ||| | || || ||| ||||||||||||||||||| | |||| || Sbjct 29758 GCAGGCCGGCGGCCAGGAAATCATGCTGCAAGTGGACGGCGGCGTGAAAATCGACAACAT 29817 Query 58330 CGGCGAGATC 58339 || || ||| Sbjct 29818 CGCTGAAATC 29827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471180768599960