Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq98 141 2e-29 seq461 114 3e-21 seq35 109 1e-19 seq401 104 6e-18 seq648 98.7 3e-16 seq172 91.5 4e-14 >seq98 Length=166217 Score = 141 bits (156), Expect = 2e-29 Identities = 271/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 7217 CCGGCAACCTCGCCAAGTGGCCCGATGCGCTGCACGATCTCCATGATGTCTTTGGCTGAT 7276 || || ||||| || || | |||||||| | ||| | ||| |||| | | ||| | | Sbjct 120289 CCAGCCACCTCACCGAGCGCGCCGATGCGGTTCACCACCTCGCTGATCT-TCTGGACGCT 120347 Query 7277 G-CGGCAGTGTTATTGCCCAGGTAGTTGATTTTGTCAGCCAGGACGACAACCTGTTGCTG 7335 | ||| | | | ||||||||||||||||| ||||| ||||| ||||| || | | ||| Sbjct 120348 GGCGGGACCGGTGTTGCCCAGGTAGTTGATCTTGTCGGCCAGCACGACCACGTCGTCCTG 120407 Query 7336 GTTCATCTTGAACGCAGAGCGCATCTCTGCCATCGCCTGGCCTGCCTGGTCAGCGGTGAT 7395 | ||||||||| || | |||| ||||| | |||||| |||| |||||| || | Sbjct 120408 GCCCATCTTGAAGGCGGTGCGCCAGGTGGCCATGGTCTGGCCCGCCTCTTCAGCGCTGGT 120467 Query 7396 GTCGAACGCCACGCCCATCTTGATGGCTGATTCCGCAAACGTCATCAGTTCTTTG-GCTG 7454 |||||| |||||||||||||| || || || || || ||| |||| | || | Sbjct 120468 GTCGAAGGCCACGCCCATCTTCGCCGCGTCCTCGGCGAAGCGCACCAGCTCTTCGCGCGG 120527 Query 7455 CAATGCCAGACTGACCACCCGCGGCAACGATCTTGCCAATGTCGTTGGCTGTCATCGGCA 7514 | | | | ||| ||| | || |||||||||||| | || ||| | ||| |||| Sbjct 120528 GATCGAC-GCCTGGCCAGCGGCAGCAACGATCTTGGCGATATCGGCCGGCACCATGGGCA 120586 Query 7515 GA--ACTTTTGACATGTTGATAATGTCCTGCCCCATCTTTTTGAATCCGTCAGGTGTGTC 7572 || || || || | | ||||| | ||||| | |||| ||||| ||||| Sbjct 120587 GACGACGCGAGAGATCCT--CCACGTCCTTGCTCATCTGCTGGAATTGCTCAGGCGTGTC 120644 Query 7573 GAAATCAACAACCTTTTTCACGTCAGCCATCG 7604 ||| || || ||||| ||||| || ||||||| Sbjct 120645 GAAGTCGACCACCTTCTTCACATCGGCCATCG 120676 >seq461 Length=6970 Score = 114 bits (126), Expect = 3e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCA-- 41256 ||||| ||||| ||| |||||||||| || | ||| ||||| || || || || ||| Sbjct 2113 GGCAATGATCCGGAAGTCCGTTACATCCCCAACGGGGGCGCAGTGGCAAACCT--GCAGG 2170 Query 41257 TCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAAT 41316 | |||||| | ||||||||| || ||| || || |||| | || || ||||||| Sbjct 2171 TGGCCACATCAGAAAGCTGGCGTGACAAACAGACGGGGGAGATGCGGGAGCAGACGGAAT 2230 Query 41317 GGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAG 41376 |||||||||| || | ||||| ||||| || ||| | ||| | ||||| |||||||| | Sbjct 2231 GGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTGGCTGGTGAATATCTGCGCAAGG 2290 Query 41377 G 41377 | Sbjct 2291 G 2291 >seq35 Length=166930 Score = 109 bits (120), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 41255 CATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGA 41314 ||||||||| || ||||||||| || ||| |||||||||| ||| |||| || Sbjct 115976 CATCGCCACCACCTCGTCCTGGAAGGACAAGGCCAGCGGCGAGAAGCGCGAAGAAACCGA 115917 Query 41315 ATGGCACCGCGTTGTCATCTTCGGTAA---GCTGGCAGAAATTGCTAGCGAATACCTGCG 41371 |||||||||||| ||||| | ||| ||||| ||||| || ||||||||||| Sbjct 115916 ATGGCACCGCGTCGTCATGT---ATAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAA 115860 Query 41372 CAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGG- 41430 || || || ||| | ||| |||||| | ||| || || || ||||| ||| ||| Sbjct 115859 GAAGGGCCGCTCGGTCTACATCGAAGGCCGTCTGAAGACCCGCAAGTGGCAAGACAAGGA 115800 Query 41431 --CTGGCGTTGATCGCTACACCACTGAAATC 41459 | |||| |||||||||| ||| |||||| Sbjct 115799 TACCGGCGCCGATCGCTACAGCACCGAAATC 115769 >seq401 Length=77198 Score = 104 bits (114), Expect = 6e-18 Identities = 196/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| || | |||||| ||| ||| || ||| |||| |||| || | | Sbjct 66635 AACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCCGAAC 66576 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||| ||| || | || ||| | | ||||| | ||||||||||| ||||| ||| Sbjct 66575 GGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCAGACC 66516 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 ||| || || | || | || || ||||||||||| || ||||||| ||| | || ||| Sbjct 66515 GGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGCCGAA 66456 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 || || | || || ||||| ||||| ||| || | | | ||||||| || || || Sbjct 66455 ATCGCGGGTGAGTATCTGCGAAAAGGGAGCCAGTGCTACGTCGAAGGCACTCTCCGCACC 66396 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 || | || ||| | | || || | ||||||||||| || ||| Sbjct 66395 CGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATC 66351 >seq648 Length=65085 Score = 98.7 bits (108), Expect = 3e-16 Identities = 181/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258 ||| | ||||| ||| | || ||| |||| | ||| ||| || | || || || | Sbjct 40075 GGCCAGGATCCCGAAGTTCGCTACTTGCCGAACGGTAACGCCGTGACCAACCTGAGTCTG 40134 Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318 || || | ||| |||| || || |||||| ||||| || |||| |||||| Sbjct 40135 GCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAATGG 40194 Query 41319 CACCGCGTTGTC-ATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGG 41377 ||||| | |||| || ||||| ||| | ||||| || || | ||||||||||||||||| Sbjct 40195 CACCGTG-TGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAAGG 40253 Query 41378 TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGT 41437 | |||| | ||| ||||||| |||| ||| || | || ||| | | ||| | Sbjct 40254 TTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTG---GGAAAAAGACGGCAT 40310 Query 41438 TGATCGCTACACCACTGAAATC 41459 | || ||||||||||||||| Sbjct 40311 CAAGCGTTACACCACTGAAATC 40332 >seq172 Length=24343 Score = 91.5 bits (100), Expect = 4e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41310 ACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTG 41369 || |||||||||||||| || ||||||| ||||| | ||||| || ||||||||||| Sbjct 1441 ACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGTGAAATCGCCGGCGAATACCTG 1382 Query 41370 CGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407 ||||| || ||| ||| | | | |||||||||||||| Sbjct 1381 CGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCG 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133193264090472