Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq44 228 1e-54 seq1288 129 7e-25 seq105 105 8e-18 seq712 100 4e-16 seq972 98.7 1e-15 seq1327 87.8 2e-12 >seq44 Length=77107 Score = 228 bits (252), Expect = 1e-54 Identities = 583/876 (67%), Gaps = 20/876 (2%) Strand=Plus/Minus Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| |||| || | |||||| || || || || ||||| | | ||||| | ||| Sbjct 10072 ACAAACTTTGGCAAGGCGATAGAGGCGAGGTTGCACACGGCGACTTCATCGGGAGAGGTG 10013 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGA 118811 |||| | ||| || ||||| ||| ||| || | ||||| || | ||||| || Sbjct 10012 TACTGAACAATCTCGGTGCA-AAGGTTG--CTGCAAGAGATGGTTCCGAGGTTCTGCTGG 9956 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| |||| || || |||||||| || ||||| || || || ||||| | || Sbjct 9955 TTGGACTTGCTGTTGCAAGCGTCCTTGTAGAGGATGTAGGGGGTACCGGTCTCGATCTGT 9896 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG-GCTCGCCCCTC 118930 |||| || ||||| ||||| ||| ||| || ||| || | | | || Sbjct 9895 GACTCGATGATAGCGAACCAGAGATCCTGAGCCTTTACGGTG-CGACGAGAGAGGCCAGG 9837 Query 118931 TT---CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 | |||| ||||| |||||||| | ||||| || ||| | ||| | ||| || Sbjct 9836 TGTCGCCTCATACTTGGTGTAGAGCTCGCGGAACTCATCTCCCCAGCACTCGGCGAGGCC 9777 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 ||||||| || || ||||||||| ||| | | ||| || |||| |||||| Sbjct 9776 AGGTGCCTCATTGGGACAGAAGAGACTCCAGTCAGAGTTGGTCTCGACACGCTCCATGAA 9717 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCC 119105 || || | || ||||||||| ||||||| || || || || ||| || | || Sbjct 9716 CAGATCAGAGACCCAGAGCGCGTAGAAGAGGTCGCGG--GCACGCATCTCCTCCTTGCCG 9659 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | || | || || | || || |||||||| || || ||||| || Sbjct 9658 TGGTTCTTGCGAAGATCAAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACG 9599 Query 119166 GCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | | ||||| || | ||| |||||| || || | |||||| | || || Sbjct 9598 GCAAAGGCACCCTTGCGCTTTCCGCCACCCTGGTCGACGTAGCGGGCAGTGTCATTGAAG 9539 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTA 119282 || ||||||||||| | || || | || ||| || || || || || || Sbjct 9538 ACGCGAAGCATTGGTACGAGTCCGTTCGAGGTGCCGTTGGTACCGCGGATGTAGGAGCGG 9479 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || | ||||||| ||||| | ||| || || |||||||||| | ||| Sbjct 9478 CTGGCACGGATCTTGTGGATGGCGATACCGAGACCACCGGCAGACTTTGAGATGAGGGCG 9419 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAA 119401 |||| | | || | ||||||| || ||||| ||| |||| || || || |||||| Sbjct 9418 CACTGCTTAAGTGTCTCGTAGATACCGTCGATGCTGTCCTCCTTCATCTG-GACGAGGAA 9360 Query 119402 GCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 ||| ||||| || || |||| ||||| | ||||||||| ||||| || ||||| | Sbjct 9359 GCAAGAGGACATCTGGGGTGTGGGGGTACCCGAGTTGAAGAGGGTTGGCGTGGCGTGCGT 9300 Query 119462 GAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTG 119521 || | || | || | || || |||||| || | | ||||| |||||| || ||||| Sbjct 9299 AAAGAGACGCTTCGAGAGCTGGTGGTAGGTTTCGACGGCGGCGTCAATGTCATCGCCGTG 9240 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||||| ||||| ||||| | ||| | |||||| Sbjct 9239 GATACCGAGAGAGACACGCATGAGCATCTGTTGGGG 9204 Score = 136 bits (150), Expect = 5e-27 Identities = 303/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 117836 TCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGA 117895 || |||||||||||| || ||||| || |||| |||||| || || | |||||||| | Sbjct 10940 TCTGAGGTAGTACATTCCAGTCTTCAGACCCTTCTTCCAAGCGTAGAAGTGCATTGAAGT 10881 Query 117896 CAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 |||||||| | | |||| | ||||| | ||| | ||| || ||||| || Sbjct 10880 CAACTTGGCAAAGTTTGGCTCGGCGATGAACACGTTGAACGACTGGCTCTGGTCGATAAA 10821 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTCC 118014 | || || || || ||||| || || | | | | | ||| ||||| |||||| Sbjct 10820 GGCACCACGGTCGGCAGCCATGTCGATGAGGGTACGTTGACG-GATCTCCCAGACAGTCT 10762 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| | ||| | || || || || || ||| || |||||||| |||| | Sbjct 10761 TGTAGAGCTCCTTTAACTCGTCAGGAATGCCCTGGATGTTCTGGATGGA---ACCCTTGT 10705 Query 118075 TGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 | |||| | | |||||| || || |||||| ||| || |||| |||| | Sbjct 10704 GAGCGATGATCTGGTTCTTCATCTCTGGTGTCCAGAGGTCAAGCTCCATGAGGTCCTTGA 10645 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 || ||||| ||||| ||| ||||| || |||||| ||| | ||||| ||| Sbjct 10644 GCAGCTGCTTGTTGACGACAGTGAACTCTCCGGCGAGGACGCGACGACTGTAGATGTTGC 10585 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 | ||||| || || || ||| ||||| || | ||| || | || ||||| || |||| Sbjct 10584 TGGTGTACGGTTCGAACGCCTCGTTGTTTCCGAGGATCTGAGAGGTCGAGGCGGTAGGCA 10525 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 ||||||| | | | ||||| |||||||| Sbjct 10524 TGGGTGCAACCATCAAACTGTTGCGGAGACC 10494 >seq1288 Length=22276 Score = 129 bits (142), Expect = 7e-25 Identities = 153/207 (74%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||| |||||||| ||| ||| || || ||||||||| || || Sbjct 671 GGCAAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCAGCTCGTTCGAGAAGGTGAGGCC 612 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||| || |||||||| | |||||| |||| || || ||||| ||||||||||| Sbjct 611 GTGCATGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 552 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || || ||||| | ||| ||||| |||||| ||| || ||| || | Sbjct 551 GCCCTCGACGGCGGCAAACGCGACGAGGCGCTCGGCAAAGCTGCGCGAGTTT---TCGAT 495 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTT 130221 ||| |||||||||| ||||| || Sbjct 494 CCAGCGGATCGCCCACTCGGCCTTCTT 468 >seq105 Length=265611 Score = 105 bits (116), Expect = 8e-18 Identities = 342/519 (66%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 13916 AGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTC 13975 ||||| |||| ||||||||| |||||||||| || ||||| | ||| Sbjct 116251 AGGTTGGCCAGGTCGGCACCGGAGAAGCCCGGGGTGCCGCGCGCGATCACCATCGGCTCG 116192 Query 13976 ACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCCAAA--ATCTTCTCGCGACCGC 14033 || ||||| |||| | | || | || || |||| | |||| |||||| |||| Sbjct 116191 ACGTCGTCGGCCAGCGGCAG--CTTGCGCATGTGCACCTTGAGGATCTGCTCGCGGCCGC 116134 Query 14034 GCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGT 14093 |||| || ||| ||| || || || || |||||||| || || || || || Sbjct 116133 GCACGTCGGCCAGGCCCACAACGACCTGGCGGTCGAAGCGACCCGGACGCAGCAGCGCCG 116074 Query 14094 CGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA-TCA 14152 || || | || ||||| || || |||||||| | | |||| || | | || Sbjct 116073 GATCCAGCACGTCGGGACGGTTGGTGGCGGCGATGACGATCACGCCC-TCGCCTCCCTCG 116015 Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 ||||| |||||||| || || || || | ||| || ||||| || |||| | || Sbjct 116014 AAGCCGTCCATCTCGACCAGCAGCTGGTTCAGGGTCTGCTCGCGCTCGTCATGACC--GC 115957 Query 14213 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 ||| || |||| || || ||||||||||| ||||| |||||||| | ||| | Sbjct 115956 CGCCCAGGCCGGCACCACGGTGGCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGC 115897 Query 14271 ATGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | ||| || | | || || || || || || | |||| ||||| || Sbjct 115896 ACGGCGCCTGCTTCTTGGCCTGC-TCGAACATGTCGCGGACGCGGCTGGCGCCGACGCCG 115838 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 || ||||| ||||| |||| | ||| | || | || ||| ||||| || | || || Sbjct 115837 ACGAACATTTCCACGAAATCCGAACCGG-AGATCGAGAAGAACGGGACCTTGGCCTCGCC 115779 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||||||| ||||| || |||||||| || || || || Sbjct 115778 GGCGATGGCGCGGGCAAGCAGGGTCTTGCCGGTACCGGG 115740 >seq712 Length=105793 Score = 100 bits (110), Expect = 4e-16 Identities = 256/380 (67%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 || || ||| ||||| || || || || || | ||| ||| || | || ||||| Sbjct 53085 GACCTGACGGTCAAAACGGCCCGGACGCAGCAACGCGGGGTCGAGTACGTCTGGACGGTT 53026 Query 14116 CGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAG 14173 || || ||||| || | |||||| ||| || || |||||||| ||||||||| || Sbjct 53025 GGTTGCAGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCAACCAGC 52968 Query 14174 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTT 14231 | || || | || || || || ||||||| | || ||| || || | || | Sbjct 52967 AACTGGTTAAGCGTCTGCTCACGCTCATCATGACC--GCCGCCCATGCCGGCGCCACGAT 52910 Query 14232 GCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG---TTGATTTTCACGGG 14288 | ||| |||||||| |||||||||||||| | ||| || || || || | || Sbjct 52909 GGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGTGCTTCT---TGG 52853 Query 14289 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 14348 | ||| || ||||| || || | ||||||| ||||| |||||||| || || || | Sbjct 52852 CCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACAAACATTTCGACGAAGT 52793 Query 14349 TGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 || ||||| || | || ||| || || || | ||| || || ||||| ||| | Sbjct 52792 CGGAACCGGAA-ATGGTGAAGAAAGGTACTTTGGCTTCGCCGGCAATGGCCTTGGCCAAC 52734 Query 14408 AGGGTCTTCCCCGTCCCTGG 14427 ||||| || || || ||||| Sbjct 52733 AGGGTTTTACCGGTACCTGG 52714 >seq972 Length=14960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 271/407 (67%), Gaps = 15/407 (4%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 || || ||||| || || || || || ||| || | ||| ||||| || | || Sbjct 917 TCGAAACGACCCGGCCGCAGAAGAGCAGAGTCTAGCACATCGGGACGGTTGGTGCCGGCA 976 Query 14126 ATGACAACGATGCCCGTCTC-GTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | || |||| |||| ||| | | ||||||| |||||||| || |||||||||| Sbjct 977 AACACGACGACGCCC-TCTGTGGTGCCAAAGCCGTCCATCTCGACCAGCAGTTGATTGAG 1035 Query 14185 GGTTTGTTCGCGTTCATCATTC-GCAGGCATACCACCCGCACT---GCGTTGCTTACCGA 14240 ||| | |||||||| ||||| | | || | || | | || ||| ||||| Sbjct 1036 GGTATTCTCGCGTTCGTCATTGTGGAAGCCT-CCGCGAGATCTTGAGCG------ACCGA 1088 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGA 14300 | ||||| || |||||||| || | ||| ||||| || || || || ||| ||||| Sbjct 1089 CAGCGTCGATCTCATCGATAAAGATGATGCATGGCGCGTTCTCGCGAGCCTCTTTAAAGA 1148 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 14360 || ||||||| | ||| ||||| ||||||||||| | ||| | | | | ||| Sbjct 1149 GTTCACGCACTCGAGACGGACCAACACCGACAAACATCTCGATAAAGTCAGAGCCAGAA- 1207 Query 14361 ATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 14419 || | | ||| || || || || || || ||| | || ||||| || ||||| || Sbjct 1208 ATGGTAAAGAATGGAACCTTTGACTCGCCAGCGGTTGCCTTTGCGAGCAGAGTCTTACCG 1267 Query 14420 GTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || ||| || |||| | |||||| |||||| |||| || Sbjct 1268 GTGCCAGGTGGTCCGACGAGGATGGCACCCTTGGGGATCTTGGCGCC 1314 >seq1327 Length=12810 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 ||||| |||| ||||| ||||||||||||| | | || | || |||| ||| | Sbjct 227 AAAGAGGTCTCTAACTCTTCTGGCACCGACACCTATATACTTTTCGTCAAAGCTGGATCC 286 Query 14356 GGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 || | || ||||||||||| | ||| || |||||||| ||||||||||||||||| Sbjct 287 GGTGGTGTAGAGGAAGGGGACGTCGGCTTCTCCGGCGATGGCGCGGGCGAGGAGGGTCTT 346 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGG 14443 || || ||||| | || | ||| ||| Sbjct 347 GCCGGTGCCTGGCTCGCCCGAGAGCAGG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618355367746120