Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44 219 5e-52 seq1288 132 6e-26 seq1016 120 4e-22 seq972 98.7 1e-15 >seq44 Length=77107 Score = 219 bits (242), Expect = 5e-52 Identities = 494/735 (67%), Gaps = 12/735 (2%) Strand=Plus/Plus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| ||||||| || | ||||||| || || || |||||||| | | | | || || Sbjct 9213 ATGCTCATGCGTGTCTCTCTCGGTATCCACGGCGATGACATTGACGCCGCCGTCGAAACC 9272 Query 104291 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 104350 ||| || || | || | || | || | ||||| || |||||||||||||| | ||| Sbjct 9273 TACCACCAGCTCTCGAAGCGTCTCTTTACGCACGCCACGCCAACCCTCTTCAACTCGGGT 9332 Query 104351 ACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 104410 || || | |||||| |||||| ||||||||| || | ||||||||| ||| || Sbjct 9333 ACCCCCACACCCCAGATGTCCTCTTGCTTCCTCGTCCAGATGAAGGAGGACAGCATCGAC 9392 Query 104411 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 104470 |||||||| | || |||| | |||| || | |||||||||| || || ||| | || Sbjct 9393 GGTATCTACGAGACACTTAAGCAGTGCGCCCTCATCTCAAAGTCTGCCGGTGGTCTCGGT 9452 Query 104471 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 104530 || |||||| | | | |||| || || || || || || || || Sbjct 9453 ATCGCCATCCACAAGATCCGTGCCAGCCGCTCCTACATCCGCGGTACCAACGGCACCTCG 9512 Query 104531 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCT 104590 | || | | |||||||||||||| || || | ||| || ||||| || | || | | Sbjct 9513 AACGGACTCGTACCAATGCTTCGCGTCTTCAATGACACTGCCCGCTACGTCGACCAGGGT 9572 Query 104591 GGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATG 104647 || | || ||||| | | || ||||| || |||||||||||||| || || | Sbjct 9573 GGCGGAAAGCGCAAGGGTGCCTTTGCCGTCTACCTCGAGCCATGGCACGCCGACGTCTTT 9632 Query 104648 GAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTC 104707 ||||||||||| | || ||||| || | |||||| ||| |||||| |||||| Sbjct 9633 GAGTTCCTTGATCTTCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGCGACCTCTTC 9692 Query 104708 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 104767 | ||| |||||| | | ||||| |||||| || | || ||| | | ||| | Sbjct 9693 TACGCGCTCTGGGTCTCTGATCTGTTCATGGAGCGTGTCGAGACCAACTCTGACTGGAGT 9752 Query 104768 CTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGC 104826 ||||| ||||| | |||||||||| ||| |||| ||| | ||| || ||||| | Sbjct 9753 CTCTTCTGTCCCAATGAGGCACCTGGCCTCGCCGAGTGCTG-GGGAGATGAGTTCCGCGA 9811 Query 104827 CCTTTACACAAAGTACGAGG---AAGAAGG--TCGGGCGACTGCGACGGTGCCAGCTGCC 104881 || ||||| ||||| |||| | || || || | || || || ||| Sbjct 9812 GCTCTACACCAAGTATGAGGCGACACCTGGCCTCTCTCGTC-GC-ACCGTAAAGGCTCAG 9869 Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 ||| | ||| ||||| || |||| || | |||||| ||||| || ||||| || ||| Sbjct 9870 GATCTCTGGTTCGCTATCATCGAGTCACAGATCGAGACCGGTACCCCCTACATCCTCTAC 9929 Query 104942 AAAGACGCCTGTAAC 104956 || ||||| || ||| Sbjct 9930 AAGGACGCTTGCAAC 9944 >seq1288 Length=22276 Score = 132 bits (146), Expect = 6e-26 Identities = 209/299 (70%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 94657 GAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTC 94716 ||||| |||||| || || |||| || || ||||| || ||| |||||| Sbjct 375 GAGACGTACAGTCTGCTGATCGACACCTACATCAAGGACACCGCGCGCAAGGCCCAGCTC 434 Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 || | |||||| | || | || | | ||||| || || ||||| || ||| Sbjct 435 TTCAACGCCATCGAGACGATCCCCGCCGTGCGCAAGAAGGCCGAGTGGGCGATCCGCTGG 494 Query 94777 TTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGT 94836 | || ||| ||||| |||||| ||||| ||| |||| ||||| || ||||| Sbjct 495 ATCGA---AAACTCGCGCAGCTTTGCCGAGCGCCTCGTCGCGTTTGCCGCCGTCGAGGGC 551 Query 94837 ATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCA 94896 ||||||||||| || || |||||| | || | |||||||||||||| || ||||||| Sbjct 552 ATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCAC 611 Query 94897 GGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||| |||||| |||||||| ||| || |||||||| |||||| || ||||| Sbjct 612 GGCCTCACCTTCTCGAACGAGCTGATCAGCCGCGACGAGGGCCTCCACTGCGACTTTGC 670 >seq1016 Length=23444 Score = 120 bits (132), Expect = 4e-22 Identities = 245/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 169138 TGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATC 169197 ||||||||||| ||| || | |||| |||||| || ||||||||||| ||||||| || Sbjct 8844 TGGCCAGAAGTGGTGGATAAAGTTGATAATGAGGCCTTTGATGTGGGAGCCGTCGTGGTC 8903 Query 169198 GGCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATCTTGATAGTC 169254 || |||||||||||||| | || || || || || || || || || || Sbjct 8904 CTGGTCGGTCATGATCATGAGGTGGCCGTAGCGCAGGGACTTGG---TGTCCTGGTACTC 8960 Query 169255 CTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT--TGATGTG 169312 || || ||||| || |||| ||| | || | ||||| ||| | ||| ||| | | Sbjct 8961 TTTGCCGTGTTGGAGGCCCATGATGGTGAGGATGTTGTTGATCTCCTCGTTGGTGAGGAG 9020 Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 || || || ||||||| || || ||| || || || |||||| ||| Sbjct 9021 CGCCTTGGTTTCGA--CATCGCGCACGTTGAGCAGCTTTCCGCGCAGGGGGAAGCAGCCG 9078 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 |||| || | || ||||| |||| ||| ||||| ||||| ||| |||||||| ||| Sbjct 9079 TAGTAGTCCCAGCCGACGACAGAGATACCGGCGACGGCGAGCAGCTTGGCCGAGTCTCCC 9138 Query 169433 TCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCC 169492 || || | || || || || | |||||| || || || || ||| || |||||| Sbjct 9139 TCTGTCAGAATCAGTGTGCAATCGTCAGATTTGGCAGTTCCGGCAAAGTTGGCCTCATCC 9198 Query 169493 A 169493 | Sbjct 9199 A 9199 >seq972 Length=14960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || || || || |||||||| || |||| ||||||||| || |||||||| ||| | Sbjct 1085 CCGACAGCGTCGATCTCATCGATAAAGATGATGCATGGCGCGTTCTCGCGAGCCTCTTTA 1144 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 ||||| || || || || | || ||||| ||||||||||| | ||||| | | | Sbjct 1145 AAGAGTTCACGCACTCGAGACGGACCAACACCGACAAACATCTCGATAAAGTCAGAGCCA 1204 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 ||| || | | ||| || || || || || || || | || ||||| |||||||| Sbjct 1205 GAA-ATGGTAAAGAATGGAACCTTTGACTCGCCAGCGGTTGCCTTTGCGAGCAGAGTCTT 1263 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||| || || || || |||||| |||||| || ||||||||||| Sbjct 1264 ACCGGTGCCAGGTGGTCCGACGAGGATGGCACCCTTGGGGATCTTGGCGCC 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583185508321480