Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5011 96.9 3e-15 seq250 91.5 1e-13 >seq5011 Length=2423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||| || || || ||||| |||| || || || ||||| | || || ||||| || Sbjct 385 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 444 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 445 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 504 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30076 || | || | |||||||||||| || || |||| ||||||| |||||| ||||| || Sbjct 505 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 564 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCAT 30102 | | |||||| || || || ||||| Sbjct 565 AGGCAGTGGCAGGGCGGCAGCGCCAT 590 >seq250 Length=59172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 29903 TGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29962 || ||||| |||||| | || || || || ||| | ||||||||| | || |||| | Sbjct 46341 TGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACC 46400 Query 29963 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 30022 |||| ||||| || | ||||||||||||||| || || || || || ||||| || Sbjct 46401 ATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCG 46460 Query 30023 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCG 30082 | |||||| | ||| || ||||| ||||| |||||| ||||| ||| | | Sbjct 46461 CTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTTG 46520 Query 30083 TGGCACGG 30090 ||||| || Sbjct 46521 TGGCAGGG 46528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406259261646084