Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq374 113 3e-20 seq1971 109 3e-19 seq1210 105 4e-18 seq1077 91.5 9e-14 seq426 91.5 9e-14 seq396 87.8 1e-12 >seq374 Length=102525 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || ||||| ||||| ||||| || || |||| || || || Sbjct 623 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGC 564 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||||||||| || || | ||||||||||| |||| || Sbjct 563 TTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGGATC-TT 505 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 ||| || ||| | ||| || || || ||| || |||| || || || || || || Sbjct 504 TGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTTGCCAGT 445 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| ||||| Sbjct 444 GAGAGTCTTTACGAAAATTTGCAT 421 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| |||||||| ||||| ||||| || || |||| || || || Sbjct 851 TGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 792 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||||||| || || || | |||||||||||| ||| || Sbjct 791 TTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCT-TGAATCTT 733 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| || ||| || |||| || || || || || || Sbjct 732 AGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTTTCCAGT 673 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||| ||||| Sbjct 672 GAGGGTCTTTACGAAAATTTGCAT 649 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | |||||| ||| |||||| ||||||||||| || || Sbjct 192 GCCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 133 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || ||||| || || || || || | |||||| ||||| || || Sbjct 132 AAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGG 73 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || || || ||| | ||| ||||| || || | Sbjct 72 AATGCCCTCCTTGTCCTGGATC-TTAGTCTTTACGTTCTCAATAGTGTCGGAGCCTTCGA 14 Query 34658 CTTCCACGGTTAT 34670 |||||| ||| || Sbjct 13 CTTCCAGGGTAAT 1 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || || || ||||| || || || || |||| |||||||| Sbjct 395 TGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGC 336 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || |||| |||||| ||||| || || | ||||||||||| |||| || Sbjct 335 TTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATC-TT 277 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| || || || || ||||| | || || || || || || Sbjct 276 AGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGT 217 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || ||||| || |||||| Sbjct 216 GAGGGTCTTGACAAAGATTTGCATG 192 >seq1971 Length=9940 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||| |||||| || ||||| ||||| || || || || Sbjct 4360 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGG 4301 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | |||||||||||| || || | || ||| Sbjct 4300 CCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCC 4241 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | || ||||| || ||| || || | ||| Sbjct 4240 TTGTCCTGGATC-TTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGT 4182 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || |||||||| Sbjct 4181 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | ||||| | || | || |||||| |||||| || ||||| || || Sbjct 5057 GTTGCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 4998 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 ||||| || || |||| || || || || ||||| || || | |||||||||||| || Sbjct 4997 GGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGG 4938 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 || | |||||||||||| |||| || || || ||| | || ||||| || || Sbjct 4937 GGGGATTCCCTCCTTGTCCTGGATC-TTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCT 4879 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || || || || || || || || || || ||||||||||| Sbjct 4878 CAACCTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||| || ||||| || || || || || || |||| |||||||| Sbjct 4573 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGC 4514 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | |||||| ||||| || || | ||||||||||| |||| || Sbjct 4513 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATC-TT 4455 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || ||||| || ||| || || | ||| || || || ||||| Sbjct 4454 GGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCGGT 4395 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 4394 CAGGGTCTTGACGAAGATCTGCAT 4371 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || |||||| || ||||| || || || || || || Sbjct 4132 AGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 4073 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || || || || | |||||||||||| || || | ||||||| Sbjct 4072 CCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCC 4013 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | ||| || || | |||||| || | ||| Sbjct 4012 TTGTCCTGGATC-TTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGGGT 3954 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || ||||| ||||| Sbjct 3953 GATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || |||||| || ||||| || || || || || || Sbjct 4816 AGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 4757 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||||||||| || || | |||||| Sbjct 4756 CCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTCC 4697 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | ||| ||||| || || || || | ||| Sbjct 4696 TTGTCCTGGATC-TTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGT 4638 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || || || ||||| Sbjct 4637 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 >seq1210 Length=15033 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||| |||||| || ||||| || || ||||| || || Sbjct 12702 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGG 12761 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||||||||| || || | ||||||| Sbjct 12762 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCC 12821 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| | ||| || || | ||| Sbjct 12822 TTGTCCTGGATC-TTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGT 12880 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || ||||| || |||||| Sbjct 12881 GATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCATG 12920 >seq1077 Length=16265 Score = 91.5 bits (100), Expect = 9e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | |||||| ||||| || |||||| || ||||| || || | Sbjct 5447 CGCCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 5388 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||| || || |||| || || || || ||||| || || | ||||||||||| || | Sbjct 5387 AAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGG 5328 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | |||||||||||| |||||| Sbjct 5327 GGATTCCCTCCTTGTCCTGGATCTT 5303 >seq426 Length=101737 Score = 91.5 bits (100), Expect = 9e-14 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| ||||| || ||||| ||||| || || | || || ||||| Sbjct 84 TGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCCTCGAGTTGC 143 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || |||| |||||| ||||| || || | |||||||||||| ||| || Sbjct 144 TTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCT-TGAATCTT 202 Query 34624 TGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || || || | ||| || || | ||| || || || || || Sbjct 203 AGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTGCCAGT 262 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || ||||| Sbjct 263 TAGAGTCTTTACAAAGATTTGCAT 286 >seq396 Length=82706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || || || ||||| ||||| || || | || |||||||| Sbjct 84 TGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCAAGTTGC 143 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | |||||| ||||| || || | |||||||||||| ||| || Sbjct 144 TTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCT-TGAATCTT 202 Query 34624 TGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || || | || || || | ||| || || | ||| || || || || || Sbjct 203 AGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTGCCAGT 262 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGATTGTAT 34717 || || || ||||| || ||||| | ||| ||| Sbjct 263 TAGGGTCTTTACAAAGATTTGCATTGTAATTATAT 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314689988034191