Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq374 131 1e-25 seq1971 113 4e-20 seq426 109 5e-19 seq1077 96.9 3e-15 seq396 95.1 1e-14 >seq374 Length=102525 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| |||| ||||| || || || || Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| || ||||| || ||||||||| Sbjct 709 GACACCATTGAGAACGTCAAGACTAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAA 768 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | || |||||||||||||| Sbjct 769 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAAC 828 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 829 ATTCAGAAGGAGTCCAC 845 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||||| || |||||| | |||||| | || || || ||| Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||| || || ||||| || || || || ||||| ||| Sbjct 481 GATACCATTGAGAACGTCAAGACAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAA 540 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | || |||| ||||||||| Sbjct 541 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAAC 600 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 601 ATCCAGAAGGAGTCCAC 617 >seq1971 Length=9940 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || ||||| ||||| ||| Sbjct 3915 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGGGATCC 3974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| || || || || ||||| ||| Sbjct 3975 GATACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAA 4034 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || ||| | ||| | ||||| |||||| Sbjct 4035 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 4094 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | ||| | || | ||| | || || || || Sbjct 4095 ATCCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTCCGTGGAGGTAT 4144 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || || || || || || Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| |||||||| || ||||| ||| Sbjct 4203 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAA 4262 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || ||| | ||| | || ||||||||| Sbjct 4263 CAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAAC 4322 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | ||| | || || || || Sbjct 4323 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGTAT 4372 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || || Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||| || ||||| || Sbjct 4431 GACACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 4490 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| ||| | || ||| | ||| | ||||| |||||| Sbjct 4491 CAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAAC 4550 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 4551 ATCCAGAAGGAGTCCAC 4567 >seq426 Length=101737 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 26975 TAATTTATACG--CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTT 27032 |||| ||||| | ||||| || |||||||| ||||| || |||||| | || || ||| Sbjct 301 TAATATATACTTACAATGCAAATCTTTGTAAAGACTCTAACTGGCAAGACCATCACCCTT 242 Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 || || || || || | || || | ||||| || ||||||||||| || || Sbjct 241 GAGGTTGAGGGTTCTGATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGT 182 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || || || |||||| |||| | ||| ||||| ||| | || || | ||| Sbjct 181 ATTCCTCCTGACCAGCAGCGTCTAATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACC 122 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 |||| |||||||| ||||| |||||||| || Sbjct 121 CTTTCTGATTACAATATTCAGAAGGAGTCCAC 90 >seq1077 Length=16265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||| | || |||| ||||| || || || ||||| || || || || ||||| Sbjct 5276 TCCGACACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGAC 5335 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 |||||||| | || | ||||||||| || | || ||| | ||| |||| || ||| Sbjct 5336 CAACAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTAC 5395 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || |||||||||||| | || ||||| | || |||| |||||| Sbjct 5396 AACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGCGGTGGC 5446 >seq396 Length=82706 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| || || || |||||| | || || || || || || ||| Sbjct 286 ATGCAAATCTTTGTAAAGACCCTAACTGGCAAGACCATCACCCTAGAGGTTGAGGGTTCC 227 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||||||||| || || || || || || || Sbjct 226 GATACTATCGAAAATGTCAAGACTAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAG 167 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| | || || | ||| |||| |||||||| Sbjct 166 CAGCGTCTGATTTTCGCTGGCAAGCAACTTGAGGATGGCCGCACCCTTTCTGATTACAAT 107 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 106 ATCCAGAAGGAGTCCAC 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434862257471040