Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq846 682 0.0 seq406 360 7e-95 seq4719 127 8e-25 >seq846 Length=12855 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 23472 CATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCC-TCGACCAGG 23530 ||||||||| || ||||| || ||||| || || | || | | ||| |||| |||| Sbjct 4375 CATGACACCGGACATTATCCTGCAGCGTACCGGGATCGACGTGAG-AGCTGTCGAACAGG 4317 Query 23531 GCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGTTCACAATG 23590 | ||||||| ||||||||| | | ||||| || ||||| ||||||||||||||||| | Sbjct 4316 GGGATGATGCATGGCACAAATTACGGCTCGGCGTCATCACCGCTTCAGAAGTTCACAACG 4257 Query 23591 TGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACA 23650 ||||||||||||| || || || | || |||||||| | |||||||| |||||||||| Sbjct 4256 TGATAGCAAAGCCCCGCTCAGGAAAGAAGTGGCCTGACATGAAAATGTCCTACTTCCACA 4197 Query 23651 CCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCAT 23710 ||||||||||||| ||||| || || ||||| ||||||||||| |||||| |||| || | Sbjct 4196 CCCTGCTGGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAATGCTAAGGCGCTGGCCT 4137 Query 23711 GGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGATGTTACCG 23770 ||||||| || ||||| | || ||| | ||||| || || |||| | | || | | Sbjct 4136 GGGGAAAACAGTACGAGAACGACGCCAGAGCCCTGTTTGAGTTTACTTCCGGCGTGAATG 4077 Query 23771 TCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTCTCCCGACG 23830 | | ||| | || || || | ||| |||||||| ||||||||||||||||||||||| | Sbjct 4076 TTACTGAATCCCCGATCATCTATCGCGACGAAAGTATGCGCACCGCCTGCTCTCCCGATG 4017 Query 23831 GTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCGCGACTTCA 23890 |||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || |||| Sbjct 4016 GTTTATGCAGTGACGGCAACGGCCTTGAACTGAAATGCCCGTTTACCTCCCGGGATTTCA 3957 Query 23891 TGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCAGGTGCAAT 23950 ||||||||||||| || || || || || || ||| | |||||||||||||||||||| | Sbjct 3956 TGAAATTCCGGCTCGGTGGTTTCGAGGCCATAAAGTCGGCTTACATGGCCCAGGTGCAGT 3897 Query 23951 TCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCCACGCATGA 24010 |||||||||||| || || || ||||||||||| |||||||| |||||||| |||| Sbjct 3896 ACAGCATGTGGGTGACGCGAAAAGATGCCTGGTACTTTGCCAACTATGACCCACGAATGA 3837 Query 24011 AGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTG 24070 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 3836 AGCGTGAAGGCCTGCATTATGTCGTGGTTGAGCGGGATGAAAATTACATGGCGAGTTTTG 3777 Query 24071 ATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTG 24130 | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 3776 ACGAGATGGTGCCGGAGTTCATCGAAAAAATGGACGAGGCACTGGCTGAAATTGGTTTTG 3717 Query 24131 TATTTGGAGAACAATGG 24147 ||||||| || |||||| Sbjct 3716 TATTTGGGGAGCAATGG 3700 >seq406 Length=38937 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 |||||||| |||||||||||||| || || ||| || ||| ||||||||| |||| || Sbjct 36682 AAATACACTCTCATTTACGCAGACCCGCCTTGGGTATACCGTGACAAAGCAGCCGACGGC 36741 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 | ||||| || | || || |||||||| |||| | ||||| ||||||||||| || Sbjct 36742 GAGCGCGGCGCCGGCTTCAAGTATCCGGTTATGAACGTGCTGGACATCTGCCGCCTGCCT 36801 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 || ||||| ||||| ||||| |||||||| || ||||||||||||| || ||||| || Sbjct 36802 GTGTGGGATCTGGCTGCCGAAGATTGCCTGCTGGCTATGTGGTGGGTTCCAACACAGCCG 36861 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGATTA 30631 ||||||| ||||||||| | ||||||||||| ||||| ||| |||||||||| ||||| Sbjct 36862 ATTGAAGCGTTGAAGGTTATCGAAGCGTGGGGATTTCGCCTGATGACGATGAAGGGATTC 36921 Query 30632 ACCTGGAACAAATGCGGGAAAAGACAGACCGACAAGCTGGTCATGGGTATGGGTAGCACC 30691 |||||| ||||| ||| | || | | ||| | ||| || ||||| || Sbjct 36922 ACCTGGCACAAA---ACGAATAAGCACAAAGGCAACAGCGCCATCGGCATGGGACACATG 36978 Query 30692 ACTCGCGCTAACAGCGAAGACTGCCTTTTTGCAGTGAAAGGAAATCTGCCCGAACGCATT 30751 || || || |||||||||||||| || ||||| ||| || || ||||| | ||||| Sbjct 36979 ACCCGGGCGAACAGCGAAGACTGTCTGTTTGCGGTGCGCGGGAAACTGCCGGCGCGCATG 37038 Query 30752 AACGCCGGAATAATCCAGTCAT-TCACTGCACCGCGCCTTGATCACTCCCGCAAGCCGGA 30810 |||| || |||| ||| |||| || |||||||| || |||| ||||||||||| Sbjct 37039 GACGCTTCGATCTGCCAG-CATGTCACGGCGCCGCGCCTGGAGAACTCGCGCAAGCCGGA 37097 Query 30811 TATGGCTCGAGAAAAGCTTGTGCAACTTCTTGGCGATGTTCCCCGGATAGAACTGTTCGC 30870 || |||| ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 37098 CGTGATCAGAGAGAAGCTGGTGCAGTTGCTTGGCGATGTGCCGCGCATCGAGCTATTCGC 37157 Query 30871 CCGCCACACCTCGCATGGATTTGATGTATGGGGTAACCAATGCG 30914 |||||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 37158 CCGCCAGTCGTCGCATGGGTTTGACGTTTGGGGAAACCAGTGCG 37201 >seq4719 Length=950 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 2487 CCGGTTTCTTCCACCACCGCACCGGACAGGCGGCTTCGCGGGAAATCGCTCCCATCTCGT 2546 |||||||||||||||| ||||||||| | ||| || | ||| || | || | ||| || Sbjct 146 CCGGTTTCTTCCACCATCGCACCGGAAAAGCGACTATGAGGGTAACC-CTGCG-TCT-GT 202 Query 2547 GAAAAATGAGAAAACCCGGTGTGCATCGTTTTTGATTATCCCCGCACACTCACGCAGA-- 2604 | | | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 203 CAGCACAGT-AAAACCCGGTGTGCATCGTTTTTGATTATTCCCGCACACTCACGCAGAAG 261 Query 2605 TAA-----GGT--GGCTGCAGTCTCTGTTAATGCGGGAATACGGCGACGATACGGCGCA 2656 || || |||| | ||| ||||||||||||||||||||||||||| ||||| Sbjct 262 GAATTCCCCGTCGGGCTACGGTCATGGTTAATGCGGGAATACGGCGACGATACAGCGCA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195166463191278